Re: [spctools-discuss] Error while running prophets with the comet results from searchGUI

2020-07-29 Thread Kate Mostovenko
nerated the "(file not found: not > created or deleted?)" error message? > > On Wed, Jul 29, 2020 at 1:10 PM Kate Mostovenko > wrote: > >> Hi Jimmy, >> >> You are right! I found the resulting pepXML files, they were written in a >> differen

Re: [spctools-discuss] Error while running prophets with the comet results from searchGUI

2020-07-29 Thread Kate Mostovenko
missing. Can you confirm the directory path in the error message is >correct i.e. the path where the mzML file is located? > > > On Wed, Jul 29, 2020 at 9:15 AM Kate Mostovenko > wrote: > >> Dear Jimmy, >> >> I have a similar problem. I have replace

Re: [spctools-discuss] Error while running prophets with the comet results from searchGUI

2020-07-29 Thread Kate Mostovenko
- Search progress: 4% - Post analysis: done Search end:07/29/2020, 12:08:30 PM, 0m:2s Is there something else I could try? Thank you, Kate Mostovenko On Monday, 13 April 2020 14:31:47 UTC-4, Jimmy Eng wrote: > > Javan, > > As the message states, the Comet binary is for v

Re: [spctools-discuss] Re: Unable to do PeptideProphet in bulk

2014-05-14 Thread Kate Mostovenko
:23 AM, Kate Mostovenko kate.mostove...@gmail.com wrote: Hi Magnus, I know there is an issue with that but the file names are relatively short adding up in total to less than 2500 characters. I'll truncate them though anyways and see if that helps. Thanks, Kate On Friday, 14 March 2014

[spctools-discuss] Unable to do PeptideProphet in bulk

2014-03-14 Thread Kate Mostovenko
Hi all, Maybe somebody had a similar problem, I tried to research the group for it but couldn't find the solution. I have 93 pep.xml files (result of X!Tandem search) and I try to run xinteract via command line. Unfortunately, the process gets terminated on the stage of InteractParser with the

[spctools-discuss] Re: Unable to do PeptideProphet in bulk

2014-03-14 Thread Kate Mostovenko
, The Apache timeout should not matter if you run in from the command line. Are the file names very long? You may have an 8192-character limit on the entire command... Cheers, Magnus On Friday, 14 March 2014 16:52:40 UTC+1, Kate Mostovenko wrote: Hi all, Maybe somebody had a similar problem