[spctools-discuss] Re: Pwiz conversion of velos raw files

2011-04-28 Thread Ronald W. Finnegan
Thanks Matt, after installing the .NET FW msConvert worked perfectly. Can you tell me how to post directly to the proteowizard-support list? On Apr 28, 5:43 pm, Matthew Chambers wrote: > Do you have the .NET framework 3.5 SP1 installed? > > -Matt > > On 4/28/2011 4:17 PM, Ron

[spctools-discuss] Re: Pwiz conversion of velos raw files

2011-04-28 Thread Ronald W. Finnegan
The manifest file is 4KB. On Apr 28, 5:09 pm, Matthew Chambers wrote: > My Reply-To is feeling neglected. :( > > Can you give me the file size of the MSFileReader.XRawfile2.SxS.manifest file? > > Thanks, > -Matt > > On 4/28/2011 4:01 PM, Ronald W. Finnegan wrote: > &

[spctools-discuss] Re: Pwiz conversion of velos raw files

2011-04-28 Thread Ronald W. Finnegan
ar.bz into the same directory? > > -Matt > > On 4/28/2011 3:51 PM, Ronald W. Finnegan wrote: > > > > > Yes, I get the same error when I run msconvert without any arguments. > > > How do I access the proteowizard support list? > > > On Apr 28, 4:46 pm, M

[spctools-discuss] Re: Pwiz conversion of velos raw files

2011-04-28 Thread Ronald W. Finnegan
t any arguments? > > -Matt > > On 4/28/2011 2:35 PM, Ronald W. Finnegan wrote: > > > > > I am trying to use Pwiz (pwiz-bin-windows-x86-vc90-release-2_1_2661) > > on an XP machine to convert velos raw files to mzXML.  I was able to > > install the Thermo msfilere

[spctools-discuss] Pwiz conversion of velos raw files

2011-04-28 Thread Ronald W. Finnegan
I am trying to use Pwiz (pwiz-bin-windows-x86-vc90-release-2_1_2661) on an XP machine to convert velos raw files to mzXML. I was able to install the Thermo msfilereader but when I run msconvert --mzXML velos.raw an error is generated: Application failed to initialize. Any suggestions? BTW, neit

[spctools-discuss] Re: TPP parsing error during Mascot Search result conversion to pepXML

2010-07-06 Thread Ronald W. Finnegan
egarding the errors you're seeing yourself, I'd just type 'make' in > the 'src' directory in your msys/mingw window.  I don't know how to > target building just a specific binary but hopefully another developer > can chime in with instructions if possibl

[spctools-discuss] Re: TPP parsing error during Mascot Search result conversion to pepXML

2010-07-02 Thread Ronald W. Finnegan
#x27; can someone please provide a suggestion as to how i might get this to work? thanks Ron On Jul 1, 8:36 pm, Brian Pratt wrote: > Have a look at > this:http://tools.proteomecenter.org/wiki/index.php?title=TPP:Building_Win... > > On Thu, Jul 1, 2010 at 3:00 PM, Ronald W. Finnegan wr

[spctools-discuss] Re: TPP parsing error during Mascot Search result conversion to pepXML

2010-07-01 Thread Ronald W. Finnegan
/src and "make _Mascot2XML". > > On Thu, Jul 1, 2010 at 9:58 AM, Ronald W. Finnegan wrote: > > > > > > > I have downloaded the MascotConverter.cxx source file. > > > How do I compile the MascotConverter file so that the TPP source file > > dependenc

[spctools-discuss] Re: TPP parsing error during Mascot Search result conversion to pepXML

2010-07-01 Thread Ronald W. Finnegan
ou to the Mascot2XML source files (which are > dependent on other source files in the TPP project). > > On Thu, Jul 1, 2010 at 6:22 AM, Ronald W. Finnegan wrote: > > > > > Jimmy, > > > I am using the Mascot2XML from the last TPP version released > > 9-9-2009.  

[spctools-discuss] Re: TPP parsing error during Mascot Search result conversion to pepXML

2010-07-01 Thread Ronald W. Finnegan
; Are you able to compile Mascot2XML from trunk and see if the problem > goes away?  Otherwise, I'll follow-up with this next week when I'm > back at work. > > On Tue, Jun 29, 2010 at 5:59 AM, Ronald W. Finnegan wrote: > > > > > Can anyone tell me if this bug re

[spctools-discuss] TPP parsing error during Mascot Search result conversion to pepXML

2010-06-29 Thread Ronald W. Finnegan
Can anyone tell me if this bug reported back in April 2009 has been fixed: Thermo Orbitrap RAW file is inputted into tpp -> convert to mzxml -> convert to mgf -> run mascot -> convert to pepXML The problem is as follows: When I use the mascot default modification Acetyl (protein N-term), the T

[spctools-discuss] running TPP and CPAS together

2008-10-28 Thread Ronald W. Finnegan
Can the TPP 4.0 rev 2 be run on the same machine with CPAS 8.2? If so, does it matter which one you install first? thanks --~--~-~--~~~---~--~~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this