I am a using TPP v5.2.0 Flammagenitus to analyze label free data
generated on a Thermo QExactive machine. I want to perform LFQ, is there
anyway to get Intensity values from the TPP. I am not sure about using
StPeter since it is based on spectral counting. How can I perform LFQ in
TPP ?
--
gt; cross-correlation score that is used in SEQUEST and Comet.
>
> type="input">D:/TPP/data/params/isb_default_input_native.xml
>
> Good luck.
>
> On Tue, Sep 29, 2020 at 10:43 PM vipulb...@gmail.com
> wrote:
>
>> Hello,
>>
>> I am a
Hello Robert,
Thanks for replying. Can you please clarify what you mean by special
features of X!Tandem? I was using it hoping that I will be able to identify
more proteins in my sample after combing the search from Comet and
X!Tandem . Am I correct?
On Wednesday, 30 September 2020 at
Hello,
I am a novice using TPP v5.2.0 Flammagenitus on a workstation (Intel,
Xeon, E5-2630 ver.5, 32Gb RAM, win 10). I have successfully run Comet,
however, the X!Tandem search is still on , its been more than 56 hours. How
much time does it take to complete the search?
What is the issue
Are the tandem parameters ok?
On Monday, 28 September 2020 at 16:16:39 UTC+5:30 vipulb...@gmail.com wrote:
> It has made 48 .PARAMS files and 1 .TANDEM file.
>
> tandem_params.xml is intact.
>
>
> On Monday, 28 September 2020 at 15:41:49 UTC+5:30 vipulb...@gmail.com
&
It has made 48 .PARAMS files and 1 .TANDEM file.
tandem_params.xml is intact.
On Monday, 28 September 2020 at 15:41:49 UTC+5:30 vipulb...@gmail.com wrote:
> Hello,
>
> I am a novice using TPP v5.2.0 Flammagenitus on a workstation (Intel,
> Xeon, E5-2630 ver.5, 32Gb RAM, win
Hello,
I am a novice using TPP v5.2.0 Flammagenitus on a workstation (Intel,
Xeon, E5-2630 ver.5, 32Gb RAM, win 10). I have successfully run Comet,
however, the X!Tandem search is still on command 1 out of 48. Its been more
than 56 hours. How much time does it take to complete the search? I
