Re: [spctools-discuss] converting RAW files to mzXML format

2011-11-18 Thread Matthew Chambers
Hi Kamesh, Please report details about the msconvert error to supp...@proteowizard.org . Thanks, -Matt On 11/18/2011 5:01 PM, Kamesh Kottapalli wrote: Thanks Joe, I downloaded msconvert but it is not working for some reason. But I finally downloaded a massmatrix converter and it work fantast

Re: [spctools-discuss] converting RAW files to mzXML format

2011-11-18 Thread Kamesh Kottapalli
Thanks Joe, I downloaded msconvert but it is not working for some reason. But I finally downloaded a massmatrix converter and it work fantastic. You may suggest the same to anyone interested in conversions. Thanks Rao On Fri, Nov 18, 2011 at 4:17 PM, Joseph Slagel < joseph.sla...@systemsbiology.

Re: [spctools-discuss] converting RAW files to mzXML format

2011-11-18 Thread Joseph Slagel
Rao, Try using msconvert to do your conversions. We've largely deprecated readw and no longer include it in the TPP installation. If you absolutely have to use it you can still get it from the spctools website. -Joe On Fri, Nov 18, 2011 at 7:58 AM, Rao wrote: > Hi friends, > > I am getting

[spctools-discuss] converting RAW files to mzXML format

2011-11-18 Thread Rao
Hi friends, I am getting this message when trying to convert my Thermo Scientific LC-MS generated Raw files to mzXML. c:\Inetpub\tpp-bin\ReAdW -v --mzXML -z c:/Inetpub/wwwroot/ISB/data/ 11-14-11-SS3R3/Rao-SS3R3No1.raw ---

Re: [spctools-discuss] Converting .RAW files

2010-03-09 Thread Natalie Tasman
I haven't worked with that Perl module. But I would strongly suggest that you first get the most current version of proteowizard's "mscovert" working from the command-line, and then run this program as a shell command from perl. msconvert, the recommended raw file converter, is under rapid

Re: [spctools-discuss] Converting .RAW files

2010-03-09 Thread Joe Slagel
I'm fairly certain that you need to have the development kit installed. Looking over the Xcalibur::Rawfile code it pretty clearly calls out an error if its not installed. -joe On Mon, Mar 8, 2010 at 8:50 PM, Amit Kumar Yadav wrote: > Dear All, > > I want to try the cpan module "Xcalibur::Rawfil

[spctools-discuss] Converting .RAW files

2010-03-09 Thread Amit Kumar Yadav
Dear All, I want to try the cpan module "Xcalibur::Rawfile" to convert RAW files to mzXML/mgf/PKL. Has anyone tried it? How does it work ? Do i need Xcalibur SDK on the machine(windows vista home premium)? -- You received this message because you are subscribed to the Google Groups "spctools-d