For LFQ and sample comparison, you also could try ProtyQuant, which uses
TPP pepXML (PeptideProphet validated) as input.
https://www.sciencedirect.com/science/article/pii/S1874391920303535
Best, Robert
Excerpts from 'Luis Mendoza' via spctools-discuss's message of 2020-10-02
13:07:24 -0700:
>
The other alternative is to run XPRESS in Label-free mode. For peaks where
it can extract intensities, it will report two results: one for the
integrated area with corresponding scan range, and one for the maximum peak
intensity along with the scan number of that peak. You can view and export
I am a using TPP v5.2.0 Flammagenitus to analyze label free data
generated on a Thermo QExactive machine. I want to perform LFQ, is there
anyway to get Intensity values from the TPP. I am not sure about using
StPeter since it is based on spectral counting. How can I perform LFQ in
TPP ?
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