Hi all,
Thanks for the helpful suggestions. Fortunately, if the filepath for the
mzML data is incorrect I get an error screen that specifies the current
incorrect filepath in the xml.
It turns out that I omitted an important detail. This error was arising
after processing the pep.xml with Libra
Sam,
I believe the spectrum link reads the Comet hits from the Comet produced
pep.xml file and generates the Lorikeet spectrum link from that file. Can
you confirm you've corrected the mzML path in that file as well?
On Mon, Feb 19, 2024 at 7:41 PM Sam Whedon wrote:
> Hi all,
>
> I am using
Hi Sam,
It does sound like potentially an issue with the mzML file path(s) inside
the comet pepXML results, though there could be other issues.
As for troubleshooting, you can inspect the URL of those troublesome links
and look for the Dta= (or File=) parameter -- is the filepath the same that
Hi all,
I am using the Pep.XML viewer with Comet data in the Comet pipeline. If I
click a link in the ions column Lorikeet produces an annotated spectrum as
anticipated. If I click on the spectrum link in the same row, navigating to
a page showing comet hits, then none of the spectrum viewer
