Hello Tanmay,
How did you generate the input pepXML files? Which search engine did you
use? Are you able to open both of those files and verify that they have
results?
Can you process results from another search engine (e.g. Comet or X!Tandem)
of the same mzML data?
Cheers,
--Luis
On Wed, Jul
Dear all
I keep trying to run PeptideProphet on two * pep.xml files but keep getting
this error. What could the issue be and how can I solve it?
Error
C:/TPP/bin/xinteract (TPP v6.3.2 Arcus, Build 202305092202-8951
(Windows_NT-x86_64)) using MAXTHREADS=1 for PeptideProphet... running:
