;David Shteynberg' via spctools-discuss <
> spctools-discuss@googlegroups.com>
> *Sent:* Wednesday, June 28, 2023 12:37 PM
> *To:* spctools-discuss@googlegroups.com >
> *Subject:* Re: [spctools-discuss] ProteinProphet output number of unique
> peptides vs total number of peptides
&
om: 'David Shteynberg' via spctools-discuss
Sent: Wednesday, June 28, 2023 12:37 PM
To: spctools-discuss@googlegroups.com
Subject: Re: [spctools-discuss] ProteinProphet output number of unique peptides
vs total number of peptides
Hello Brian,
Thanks for the discussion. The way this is
more Street
>>
>> Baltimore, MD. 21201
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>> (410)706-8207 <(410)%20706-8207>
>> ----------
>> *From:* 'David Shteynberg' via spctools-discuss <
>> spctools...@googlegroups.com>
>> *Sent:* Wednesday, June 28, 202
University of Maryland School of Medicine
>
> BioPark One Rm 307
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> 800 West Baltimore Street
>
> Baltimore, MD. 21201
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> (410)706-8207
> --
> *From:* 'David Shteynberg' via spctools-discuss <
> spctools-discuss@googlegroups.com>
> *S
>
> --
> *From:* 'David Shteynberg' via spctools-discuss <
> spctools...@googlegroups.com>
> *Sent:* Wednesday, June 28, 2023 11:33 AM
> *To:* spctools...@googlegroups.com
> *Subject:* Re: [spctools-discuss] ProteinProphet output numbe
ne
BioPark One Rm 307
800 West Baltimore Street
Baltimore, MD. 21201
(410)706-8207
From: 'David Shteynberg' via spctools-discuss
Sent: Wednesday, June 28, 2023 11:33 AM
To: spctools-discuss@googlegroups.com
Subject: Re: [spctools-discuss] ProteinPro
Hi Murielle,
Sorry this is a little confusing. Column "num unique peps" represents
total number of unique peptides mapping to the protein. The "tot num peps"
counts the PSMs that are "contributing evidence" (last column) to the
protein, sometimes this number can be lower because not all peptides
Hi David,
Thank you for such a quick reply!
I used tpp version 6.2.0 run via a singularity image and I produced the
table by including the EXCELXX option in proteinprophet.
Cheers,
Murielle
On Wednesday, June 28, 2023 at 12:44:03 AM UTC+2 David Shteynberg wrote:
> Hi Murielle,
>
> Thanks
