[spctools-discuss] Re: TPP parsing error during Mascot Search result conversion to pepXML

2010-07-06 Thread Ronald W. Finnegan
Thank for your help Jimmy; the binary worked fine and we are now able to search mascot with the N-terminus acetylation modification. On Jul 2, 10:13 pm, Jimmy Eng jke...@gmail.com wrote: Ron, Here's a compiled Mascot2XML.exe binary for you:    http://tinyurl.com/24a8jna Regarding the

[spctools-discuss] Re: TPP parsing error during Mascot Search result conversion to pepXML

2010-07-02 Thread Ronald W. Finnegan
I downloaded the MascotConverter.cxx rev 4945 checked in by Jimmy on 4-15-10 and copied it to this location within the TPP source distribution: C:\TPP431src\tpp\src\Parsers\Algorithm2XML\Mascot2XML\ I am getting these errors when I run the makefile command: lnt...@nimh-lntvm1

Re: [spctools-discuss] Re: TPP parsing error during Mascot Search result conversion to pepXML

2010-07-02 Thread Jimmy Eng
Ron, Here's a compiled Mascot2XML.exe binary for you: http://tinyurl.com/24a8jna Regarding the errors you're seeing yourself, I'd just type 'make' in the 'src' directory in your msys/mingw window. I don't know how to target building just a specific binary but hopefully another developer can

[spctools-discuss] Re: TPP parsing error during Mascot Search result conversion to pepXML

2010-07-01 Thread Ronald W. Finnegan
Jimmy, I am using the Mascot2XML from the last TPP version released 9-9-2009. Can you please point me to the trunk where I can download rev 4945 from your April 15, 2010 check-in? thanks Ron On Jun 30, 7:02 pm, Jimmy Eng jke...@gmail.com wrote: I have faint memories of dealing with this but

Re: [spctools-discuss] Re: TPP parsing error during Mascot Search result conversion to pepXML

2010-07-01 Thread Brian Pratt
You'll need to get the entire source tree from /sashimi/trunk/trans_proteomic_pipeline/ down, them cd to /sashimi/trunk/trans_proteomic_pipeline/src and make _Mascot2XML. On Thu, Jul 1, 2010 at 9:58 AM, Ronald W. Finnegan r...@mail.nih.gov wrote: I have downloaded the MascotConverter.cxx source

[spctools-discuss] Re: TPP parsing error during Mascot Search result conversion to pepXML

2010-07-01 Thread Ronald W. Finnegan
can you recommend a compiler that i can use to run makefile on a 64 bit windows server? On Jul 1, 1:42 pm, Brian Pratt brian.pr...@insilicos.com wrote: You'll need to get the entire source tree from /sashimi/trunk/trans_proteomic_pipeline/ down, them cd to

Re: [spctools-discuss] Re: TPP parsing error during Mascot Search result conversion to pepXML

2010-07-01 Thread Brian Pratt
Have a look at this: http://tools.proteomecenter.org/wiki/index.php?title=TPP:Building_Windows-native_binaries_with_Mingwprintable=yesprintable=yes On Thu, Jul 1, 2010 at 3:00 PM, Ronald W. Finnegan r...@mail.nih.gov wrote: can you recommend a compiler that i can use to run makefile on a 64 bit