Thanks for the detailed instructions Jimmy. I'll give this a shot.
Regards,
Ben
On Sat, Apr 25, 2009 at 5:20 PM, Jimmy Eng wrote:
>
> Ben,
>
> Your best place for help with running X! Tandem from the command line is
> probably the GPM's website.
>
> helpful links:
> http://www.thegpm.org/tand
Ben,
Your best place for help with running X! Tandem from the command line is
probably the GPM's website.
helpful links:
http://www.thegpm.org/tandem/tandem_install_faq.html
http://www.thegpm.org/TANDEM/api/index.html
You need some input xml parameters file. Such a file would contain
entries
Okay, thanks.
I guess what I wanted to get at is how do I run Xtandem from the command
line. Tandem seems to only want an mzXML file, so how do I point it at the
tandem.params and the fasta database? I can't find this in any of the
documentation.
Thanks,
Ben
On Fri, Apr 24, 2009 at 4:45 PM, Bri
That logic is part of the Petunia perl script (as opposed to something
called from the script).
-Original Message-
From: spctools-discuss@googlegroups.com
[mailto:spctools-disc...@googlegroups.com] On Behalf Of Ben Collins
Sent: Friday, April 24, 2009 8:11 AM
To: spctools-discuss
Subject:
