I'm trying to run Tandem2XML to convert an X!Tandem output file to
pepXML, but I get an error every time I try to run it.
When I run: Tandem2XML /full/path/name/to/tandem_output.mzXML /full/
path/name/to/test.pepXML
I get the errors:
WARNING: Failed to open mzXML file.
Output will not
It's not an error but rather a warning. The warning by itself doesn't
indicate a critical problem (although I suspect you might have other
problems). Take a look at your pep.xml file and see if it looks like
it has reasonable content in it.
Some things to note:
- your tandem input file should
oops - I just read your last note. Name your Tandem searches with an
extension.xtan.xml or just .xml; using .mzXML for those is asking for
trouble.
On Wed, May 5, 2010 at 2:43 PM, Jimmy Eng jke...@gmail.com wrote:
It's not an error but rather a warning. The warning by itself doesn't
indicate
