Re: [spctools-discuss] mzML to mgf, ms2....

2010-07-07 Thread Jimmy Eng
fwiw, MzXML2Search does support mzML input files too. On Wed, Jul 7, 2010 at 11:24 AM, Jesse J wrote: > mzML is the new format that should be used, but I haven't seen any > programs out there that will convert mzML into mgf and ms2, like > MzXML2Search does with mzXML. > > With some help from my

Re: [spctools-discuss] mzML to mgf, ms2....

2010-07-07 Thread Matthew Chambers
Hi Jesse, All ProteoWizard tools and clients can read/write the decent open formats on any platform: http://proteowizard.sourceforge.net/technical/formats/index.html PKL, DTA, and mzData (which is cursed by dialect issues) are the only missing formats I'm aware of. -Matt On 7/7/2010 1:24 PM

[spctools-discuss] mzML to mgf, ms2....

2010-07-07 Thread Jesse J
mzML is the new format that should be used, but I haven't seen any programs out there that will convert mzML into mgf and ms2, like MzXML2Search does with mzXML. With some help from my professor, I've expanded ms-msrun to support mzML and thus be able to convert mzML into mgf or ms2, but I'm curio