Hello,
Generally this message means that you have no PSMs with good likelihoods of
being correct in this analysis set.
There are a few "usual suspect" reasons for why you would not observe any
PSMs with non-zero probabilities among your results.
1. Poor quality data (e.g. empty sample)
2.
Hi,
Congrats on the new instrument, and happy holidays as well!
The error seems to indicate that there is no input data for ProteinProphet
to work with; can you verify that the input file contains validated search
results with probabilities above 0.2 ? Are there any other errors or
warnings in
Hi all,
Happy holidays! I have a new Eclipse in the lab and have been running my
Comet + TPP pipeline successfully on a lot of data downloaded from PRIDE
lately, but have run into an error with the new DDA data generated on the
Eclipse. It seems to be failing at the protein prophet step and
