Hi,
I am new to python3. I am working in computational biology. I need to
submit many sequence (one by one) to a http web server (
http://mfold.rna.albany.edu/?q=mfold/RNA-Folding-Form) . After the
processing I need to download the output file. There is an offline package
for this server but
-Form )
3. Then further steps downloading the output..
Thanks,
On Fri, Dec 13, 2013 at 12:19 AM, Joel Goldstick
joel.goldst...@gmail.comwrote:
On Thu, Dec 12, 2013 at 1:41 PM, Amal Thomas amalthomas...@gmail.comwrote:
Hi,
I am new to python3. I am working in computational biology. I need
On Fri, Dec 13, 2013 at 12:29 AM, Joel Goldstick
joel.goldst...@gmail.comwrote:
So, read the Requests tutorial, and study the POST examples as POST is the
http method that is used when filling in a form. First you will need to
examine the form to learn the names of the fields you need to
On Mon, Nov 4, 2013 at 10:00 PM, Steven D'Aprano st...@pearwood.info
wrote:
import os
filename = YOUR FILE NAME HERE
print(File size:, os.stat(filename).st_size)
f = open(filename)
content = f.read()
print(Length of content actually read:, len(content))
print(Current file position:,
this.
Working on
Python 3.3.1,ubuntu 13.04(Linux 3.8.0-29-generic x64)
Thanks
--
*AMAL THOMAS *
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:07, Amal Thomas wrote:
I am currently using this method to load my text file:
*f = open(output.txt)
content=io.StringIO(f.read())
f.close()*
But I have found that this method uses 4 times the size of text file.
So why not use
f = open(output.txt)
content=f.read()
f.close
Yes I have found that after loading to RAM and then reading lines by lines
saves a huge amount of time since my text files are very huge.
On Mon, Nov 4, 2013 at 6:46 PM, Alan Gauld alan.ga...@btinternet.comwrote:
On 04/11/13 13:06, Amal Thomas wrote:
Present code:
*f = open(output.txt
in time.
Thanks,
On Mon, Nov 4, 2013 at 7:11 PM, Peter Otten __pete...@web.de wrote:
Amal Thomas wrote:
Yes I have found that after loading to RAM and then reading lines by
lines
saves a huge amount of time since my text files are very huge.
How exactly did you find out? You should only
, Nov 4, 2013 at 7:16 PM, William Ray Wing w...@mac.com wrote:
On Nov 4, 2013, at 8:30 AM, Amal Thomas amalthomas...@gmail.com wrote:
How long are the lines in your file? In particular, are they many
hundreds or thousands of characters long, or are they only few hundred
characters, say 200
@Dave: thanks.. By the way I am running my codes on a server with about
100GB ram but I cant afford my code to use 4-5 times the size of the text
file. Now I am using read() / readlines() , these seems to be more
efficient in memory usage than io.StringIO(f.read()).
On Mon, Nov 4, 2013 at 9:23
that is clear and understandable, then try to optimize
it if necessary.
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= open(filename)
content = f.read()
print(Length of content actually read:, len(content))
print(Current file position:, f.tell())
f.close()
and send us the output.
--
*AMAL THOMAS*
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--
*AMAL THOMAS*
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hi,
I am a beginner. I am using a unix sytem (ubuntu 12.10). Python 2.7.3
is installed in my system. I found out that Python has version upto 3.3.2.
Should I update my python version? Is the syntaxes of the each version
different?
Thanks,
Thomas
___
Thank you very much..!! I am starting to learn python for my Bioinformatics
work, so I would look for the version that has libraries helpful for me..
On Mon, May 20, 2013 at 6:38 PM, Dave Angel da...@davea.name wrote:
On 05/20/2013 05:59 AM, Amal Thomas wrote:
hi,
I am a beginner. I am
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