Re: [Tutor] Huge list comprehension

2017-06-12 Thread syed zaidi
ension To: syed zaidi, tutor take a look at numpy and don't necessarily give us the whole code. it becomes too long without purpose Abdur-Rahmaan Janhangeer, Mauritius abdurrahmaanjanhangeer.wordpress.com<http://abdurrahmaanjanhangeer.wordpress.com> On 6 Jun 2017 03:26, "syed

[Tutor] Huge list comprehension

2017-06-05 Thread syed zaidi
hi, I would appreciate if you can help me suggesting a quick and efficient strategy for comparing multiple lists with one principal list I have about 125 lists containing about 100,000 numerical entries in each my principal list contains about 6 million entries. I want to compare each small

Re: [Tutor] FASTA FILE SUB-SEQUENCE EXTRACTION

2016-03-09 Thread syed zaidi
nny@gmail.com> Date: 3/9/2016 08:39 (GMT+08:00) To: syed zaidi <syedzaid...@hotmail.co.uk> Cc: Python Tutor Mailing List <tutor@python.org> Subject: Re: [Tutor] FASTA FILE SUB-SEQUENCE EXTRACTION You should probably look into Biopython: http://biopython.org/wiki/Main_Page Yo

Re: [Tutor] FASTA FILE SUB-SEQUENCE EXTRACTION

2016-03-08 Thread syed zaidi
STA FILE SUB-SEQUENCE EXTRACTION > From: wolfrage8...@gmail.com > To: syedzaid...@hotmail.co.uk > > What is FASTA? This seems very specific. Do you have any code thus far > that is failing? > > On Tue, Mar 8, 2016 at 2:33 AM, syed zaidi <syedzaid...@hotmail.co.uk> wrote: &g

[Tutor] FASTA FILE SUB-SEQUENCE EXTRACTION

2016-03-08 Thread syed zaidi
Hello all, I am stuck in a problem, I hope someone can help me out. I have a FASTA file with multiple sequences and another file with the gene coordinates. SAMPLEFASTA FILE: >EBM_revised_C2034_1

[Tutor] Consecutive Sequence

2012-10-17 Thread syed zaidi
Hi,I am trying to develop a python code that takes a character string as input and finds for the occurrence of letters that are occurring thrice or more consecutively.For E.g. a = 'ataattaaacagagtgagcagt'In the output I want a list of those characters that are occuring thrice or more.

[Tutor] Help with regular expression

2012-04-15 Thread syed zaidi
Dear all Can someone please tell me how to solve the following problem. I have developed a python code to extract specific information from more than 1000 files which have slightly different format. The problem I am facing is that I have to develop specific RE for each of the file which is

Re: [Tutor] Help with regular expression

2012-04-15 Thread syed zaidi
Thanks for the help I need the whole line starting from 'D' but in seperate columns.like KO, EC, Gene ID, Enzyme Name etc Date: Mon, 16 Apr 2012 00:24:17 +1000 From: st...@pearwood.info To: tutor@python.org Subject: Re: [Tutor] Help with regular expression syed zaidi wrote: Dear Steve