Well, I know about it but I want to perform the task using python 2.7 since the tool I'm trying to develop is in 2.7. For some reason I want to do it without biopython please help. ..
Sent from my Samsung Galaxy smartphone.<div> </div><div> </div><!-- originalMessage --><div>-------- Original message --------</div><div>From: Danny Yoo <[email protected]> </div><div>Date: 3/9/2016 08:39 (GMT+08:00) </div><div>To: syed zaidi <[email protected]> </div><div>Cc: Python Tutor Mailing List <[email protected]> </div><div>Subject: Re: [Tutor] FASTA FILE SUB-SEQUENCE EXTRACTION </div><div> </div> You should probably look into Biopython: http://biopython.org/wiki/Main_Page Your question should involve fairly straightforward use of the Seq methods of Biopython. You should not try to write your own FASTA parser: Biopython comes with a good one already. Note that the tutor mailing list is not entirely general: the questions here are expected to be beginner-level. Bioinformatics questions are a bit out of scope for tutor @python.org, since they involve a specialized domain that our participants here won't probably be very familiar with. The last times I participated, the Biopython forums were very active. You should check them out: http://biopython.org/wiki/Mailing_lists Good luck! _______________________________________________ Tutor maillist - [email protected] To unsubscribe or change subscription options: https://mail.python.org/mailman/listinfo/tutor
