dear all,
thanks so much!! I explain better my problem :http://pastebin.com/iiPZMi2U
this is my workflow. Take my data from readset an create a command list
ena = Rnaseq()
The order of the self.step are the order I wan to to execute my analisys.
So this is the order:
In [160]: ena.show()
1-
Hello,
The order of the self.step are the order I wan to to execute my analisys.
So this is the order:
In [160]: ena.show()
1- trimmomatic
2- merge_trimmomatic_stats
3- star
4- picard_sort_sam
5- rnaseqc
6- wiggle
7- cufflinks
8- cuffquant
9- gq_seq_utils_exploratory_analysis_rnaseq