Hello,
> The order of the self.step are the order I wan to to execute my analisys.
> So this is the order:
> In [160]: ena.show()
> 1- trimmomatic
> 2- merge_trimmomatic_stats
> 3- star
> 4- picard_sort_sam
> 5- rnaseqc
> 6- wiggle
> 7- cufflinks
> 8- cuffquant
> 9- gq_seq_utils_exploratory_analys
dear all,
thanks so much!! I explain better my problem :http://pastebin.com/iiPZMi2U
this is my workflow. Take my data from readset an create a command list
ena = Rnaseq()
The order of the self.step are the order I wan to to execute my analisys.
So this is the order:
In [160]: ena.show()
1- tr
