Thanks for the suggestion and corrections.
I don't put the else staement onf if log_file but now I realize my mistake
I have 3 comand to do:
step_1_out =["STAR --genomeDir /home/sbsuser/databases/Starhg19/GenomeDir/ --
runMode alignReads --readFilesIn %s %s --runThreadN 12 --readFilesCommand
z
On Wed, Sep 10, 2014 at 11:20:38AM +0200, jarod...@libero.it wrote:
> If I follow the exmple I have this type of error:
> File "./RNA_prova.py", line 73, in run
> for line in p1.stdout():
> TypeError: 'NoneType' object is not callable
Somehow you have p1.stdout set to None. You can confirm thi
On 09/10/2014 11:20 AM, jarod...@libero.it wrote:
If I follow the exmple I have this type of error:
File "./RNA_prova.py", line 73, in run
for line in p1.stdout():
TypeError: 'NoneType' object is not callable
You have at least two errors in your script below:
This time you're not piping
If I follow the exmple I have this type of error:
File "./RNA_prova.py", line 73, in run
for line in p1.stdout():
TypeError: 'NoneType' object is not callable
This is the class I use:
def run(cmd,pi):
import subprocess
import time
import logging
