Danny Yoo wrote:
>
> On Wed, 21 Dec 2005, ps python wrote:
>
>
>>Dear drs. Yoo and johnson, Thank you very much for your help. I
>>successully parsed my GO annotation from all 16,000 files. thanks again
>>for your kind help
>
>
> I'm glad to hear that it's working for you now. Just as a clar
On Wed, 21 Dec 2005, ps python wrote:
> Dear drs. Yoo and johnson, Thank you very much for your help. I
> successully parsed my GO annotation from all 16,000 files. thanks again
> for your kind help
I'm glad to hear that it's working for you now. Just as a clarification:
I'm not a doctor. *g
Dear drs. Yoo and johnson,
Thank you very much for your help. I successully
parsed my GO annotation from all 16,000 files.
thanks again for your kind help
--- Danny Yoo <[EMAIL PROTECTED]> wrote:
>
> > >>> for m in mydata.findall('//functions'):
> > print m.get('molecular_class').text
>
> >>> for m in mydata.findall('//functions'):
> print m.get('molecular_class').text
>
> >>> for m in mydata.findall('//functions'):
> print m.find('molecular_class').text.strip()
>
> >>> for process in
> mydata.findall('//biological_process'):
> print process.get('title').text
Thank you for your email Dr. Johnson.
I need to print :
gene_symbol (from line
ALDH3A1)
entry_cdna (from line
NM_000691.3)
molecular_class
(from line
Enzyme:Dehydrogenase)
title (from tags Catalytic
activity)
title (from tags section
Metabolism)
title (from tags section
cytoplasm)
Thi
ps python wrote:
> Dear Drs. Johnson and Yoo ,
> for the last 1 week I have been working on parsing
> the elements from a bunch of XML files following your
> suggestions.
>
> from elementtree.ElementTree import ElementTree
>
mydata = ElementTree(file='4.xml')
for process in
>
> my
Dear Drs. Johnson and Yoo ,
for the last 1 week I have been working on parsing
the elements from a bunch of XML files following your
suggestions.
until now I have been unsuccessul. I have no clue why
i am failing.
I have ~16K XML files. this data obtained from johns
hopkins university (of co
Srinivas Iyyer wrote:
> Hi group,
> I just have another question in parsin XML files. I
> found it very easy to parse XML files with kent and
> danny's help.
>
> I realized that all my XML files have '\t' and '\n'
> and whitespace. these extra features are making to
> extract the text data fro
Hi group,
I just have another question in parsin XML files. I
found it very easy to parse XML files with kent and
danny's help.
I realized that all my XML files have '\t' and '\n'
and whitespace. these extra features are making to
extract the text data from the xml files very
difficult. I can
ps python wrote:
> Kent and Dany,
> Thanks for your replies.
>
> Here fromstring() assuming that the input is in a kind
> of text format.
Right, that is for the sake of a simple example.
>
> what should be the case when I am reading files
> directly.
>
> I am using the following :
>
> fr
Kent and Dany,
Thanks for your replies.
Here fromstring() assuming that the input is in a kind
of text format.
what should be the case when I am reading files
directly.
I am using the following :
from elementtree.ElementTree import ElementTree
mydata = ElementTree(file='1.xml')
iter =
ps python wrote:
> Hi,
>
> using ElementTree, how can I extract text of a
> particular element, or a child node.
>
> For example:
>
>
>
>Signal transduction
>
>
>Energy process
>
>
>
> In the case where I already know which element tags
> have the in
> For example:
>
>
>
>Signal transduction
>
>
>Energy process
>
>
>
> I looked at some tutorials (eg. Ogbuji). Those
> examples described to extract all text of nodes and
> child nodes.
Hi Mdan,
The following might help:
http://article.gmane.org/
Hi,
using ElementTree, how can I extract text of a
particular element, or a child node.
For example:
Signal transduction
Energy process
I looked at some tutorials (eg. Ogbuji). Those
examples described to extract all text of nodes and
child nodes.
In
Hi,
using ElementTree, how can I extract text of a
particular element, or a child node.
For example:
Signal transduction
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