On Wed, 21 Dec 2005, ps python wrote:
Dear drs. Yoo and johnson, Thank you very much for your help. I
successully parsed my GO annotation from all 16,000 files. thanks again
for your kind help
I'm glad to hear that it's working for you now. Just as a clarification:
I'm not a doctor.
Danny Yoo wrote:
On Wed, 21 Dec 2005, ps python wrote:
Dear drs. Yoo and johnson, Thank you very much for your help. I
successully parsed my GO annotation from all 16,000 files. thanks again
for your kind help
I'm glad to hear that it's working for you now. Just as a clarification:
Dear Drs. Johnson and Yoo ,
for the last 1 week I have been working on parsing
the elements from a bunch of XML files following your
suggestions.
until now I have been unsuccessul. I have no clue why
i am failing.
I have ~16K XML files. this data obtained from johns
hopkins university (of
ps python wrote:
Dear Drs. Johnson and Yoo ,
for the last 1 week I have been working on parsing
the elements from a bunch of XML files following your
suggestions.
from elementtree.ElementTree import ElementTree
mydata = ElementTree(file='4.xml')
for process in
Dear drs. Yoo and johnson,
Thank you very much for your help. I successully
parsed my GO annotation from all 16,000 files.
thanks again for your kind help
--- Danny Yoo [EMAIL PROTECTED] wrote:
for m in mydata.findall('//functions'):
print m.get('molecular_class').text
for m
Hi group,
I just have another question in parsin XML files. I
found it very easy to parse XML files with kent and
danny's help.
I realized that all my XML files have '\t' and '\n'
and whitespace. these extra features are making to
extract the text data from the xml files very
difficult. I
Srinivas Iyyer wrote:
Hi group,
I just have another question in parsin XML files. I
found it very easy to parse XML files with kent and
danny's help.
I realized that all my XML files have '\t' and '\n'
and whitespace. these extra features are making to
extract the text data from the
Hi,
using ElementTree, how can I extract text of a
particular element, or a child node.
For example:
biological_processess
biological_process
Signal transduction
/biological_process
biological_process
Hi,
using ElementTree, how can I extract text of a
particular element, or a child node.
For example:
biological_processess
biological_process
Signal transduction
/biological_process
biological_process
Energy process
/biological_process
/biological_processess
For example:
biological_processess
biological_process
Signal transduction
/biological_process
biological_process
Energy process
/biological_process
/biological_processess
I looked at some tutorials (eg. Ogbuji). Those
examples described to extract
ps python wrote:
Hi,
using ElementTree, how can I extract text of a
particular element, or a child node.
For example:
biological_processess
biological_process
Signal transduction
/biological_process
biological_process
Energy process
ps python wrote:
Kent and Dany,
Thanks for your replies.
Here fromstring() assuming that the input is in a kind
of text format.
Right, that is for the sake of a simple example.
what should be the case when I am reading files
directly.
I am using the following :
from
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