Re: Exception "Already has missing vertex on this worker"

2013-09-26 Thread Yingyi Bu
The job eventually fails because of out-of-hearbeat from tasks: Task attempt_201309262131_0001_m_58_0 failed to report status for 602 seconds. Killing! Any suggestions? Yingyi On Thu, Sep 26, 2013 at 3:27 PM, Yingyi Bu wrote: > I checked several other slave machines. > Basically the map

Re: Exception "Already has missing vertex on this worker"

2013-09-26 Thread Yingyi Bu
I checked several other slave machines. Basically the map task is waiting on this trace: "main" prio=10 tid=0x098ed000 nid=0x7beb in Object.wait() [0x413e7000] java.lang.Thread.State: TIMED_WAITING (on object monitor) at java.lang.Object.wait(Native Method) - wai

Re: Exception "Already has missing vertex on this worker"

2013-09-26 Thread Avery Ching
Hopefully you are using combiners and also re-using objects. This can keep memory usage much lower. Also implementing your own OutEdges can make it much more efficient. How much memory do you have? Avery On 9/26/13 12:51 PM, Yingyi Bu wrote: >> I think you may have added the same vertex 2x?

Re: Exception "Already has missing vertex on this worker"

2013-09-26 Thread Yingyi Bu
>> I think you may have added the same vertex 2x? I ran the job over roughly half of the graph and saw this. However the input is not a connected components such that there might be target vertex ids which do not exist. When I ran the job over the entire graph, I cannot see this but the job fails

Re: Exception "Already has missing vertex on this worker"

2013-09-26 Thread Avery Ching
I think you may have added the same vertex 2x? That being said, I don't see why the code is this way. It should be fine. We should file a JIRA. On 9/26/13 11:02 AM, Yingyi Bu wrote: Thanks, Lukas! I think the reason of this exception is that I run the job over part of the graph where some t

Re: Exception "Already has missing vertex on this worker"

2013-09-26 Thread Yingyi Bu
Thanks, Lukas! I think the reason of this exception is that I run the job over part of the graph where some target ids do not exist. Yingyi On Thu, Sep 26, 2013 at 1:13 AM, Lukas Nalezenec < lukas.naleze...@firma.seznam.cz> wrote: > Hi, > Do you use partition balancing ? > Lukas > > > > On 09/

Re: Exception "Already has missing vertex on this worker"

2013-09-26 Thread Lukas Nalezenec
Hi, Do you use partition balancing ? Lukas On 09/26/13 05:16, Yingyi Bu wrote: Hi, I got this exception when I ran a Giraph-1.0.0 PageRank job over a 60 machine cluster with 28GB input data. But I got this exception: java.lang.IllegalStateException: run: Caught an unrecoverable exception re

Exception "Already has missing vertex on this worker"

2013-09-25 Thread Yingyi Bu
Hi, I got this exception when I ran a Giraph-1.0.0 PageRank job over a 60 machine cluster with 28GB input data. But I got this exception: java.lang.IllegalStateException: run: Caught an unrecoverable exception resolveMutations: Already has missing vertex on this worker for 20464109 at or