Re: [OMPI users] gfortran bindings apparently not built on mac os leopard

2008-06-18 Thread Jeff Squyres
FWIW, I added this issue to the FAQ under the "OS X" section to make it a little easier to find. On Jun 17, 2008, at 5:17 PM, Jeff Squyres wrote: Sorry for not replying earlier -- glad you figured it out. Yes, if you didn't also reset the LIBRARY_PATH, the "wrong" libmpi (and friends) will

Re: [OMPI users] gfortran bindings apparently not built on mac os leopard

2008-06-18 Thread Brian W. Barrett
Thanks for adding the section, but the information contained within is wrong (as was the information in this e-mail thread). OS X essentially *always* adds a -rpath to both executables depending on libraries and libraries depending on other libraries. There is no need to set LD_LIBRARY_PATH,

Re: [OMPI users] gfortran bindings apparently not built on mac os leopard

2008-06-18 Thread Jeff Squyres
Thanks Brian -- I've updated the FAQ. On Jun 18, 2008, at 9:56 AM, Brian W. Barrett wrote: Thanks for adding the section, but the information contained within is wrong (as was the information in this e-mail thread). OS X essentially *always* adds a -rpath to both executables depending on

[OMPI users] Error in mx_init message

2008-06-18 Thread SLIM H.A.
I have OpenMPI-1.2.5 configured with myrinet and infiniband: OMPI_MCA_btl=openib,self,sm The job runs with the "error" message "Error in mx_init (error MX driver not loaded.)" which makes sense in itself as there is no myrinet card on the node. Is it correct to assume that the ib interconnec

Re: [OMPI users] Error in mx_init message

2008-06-18 Thread George Bosilca
This is a different issue. On top of Myrinet, Open MPI support two nodes: cm and the others. Basically, the difference is how the card will be used. If you only specify the btls then Open MPI will try to initialize the CM PML and that's how this error message appears. If you add OMPI_MCA_pm

[OMPI users] Open MPI timeout problems.

2008-06-18 Thread Peter Diamessis
Dear folks, I would appreciate your help on the following: I'm running a parallel CFD code on the Army Research Lab's MJM Linux cluster, which uses Open-MPI. I've run the same code on other Linux clusters that use MPICH2 and had never run into this problem. I'm quite convinced that the bottlenec

Re: [OMPI users] Error in mx_init message

2008-06-18 Thread SLIM H.A.
> -Original Message- > From: users-boun...@open-mpi.org > [mailto:users-boun...@open-mpi.org] On Behalf Of George Bosilca > Sent: 18 June 2008 15:27 > To: Open MPI Users > Subject: Re: [OMPI users] Error in mx_init message > > This is a different issue. On top of Myrinet, Open MPI suppo

Re: [OMPI users] Error in mx_init message

2008-06-18 Thread SLIM H.A.
Hi George I just tried that and got a different error message: -- No available pml components were found! This means that there are no components of this type installed on your system or all the components reported that the

Re: [OMPI users] Error in mx_init message

2008-06-18 Thread Rainer Keller
Dear Henk, could You please try the reverse and specifically select the pml, that would adress the openib BTLs, by using: mpirun -np $NSLOTS --mca pml ob1 $exe Hope, this helps. CU, Rainer On Mittwoch, 18. Juni 2008, SLIM H.A. wrote: > Hi George > > I just tried that and got a different error