[OMPI users] mpi_abort_delay

2012-02-03 Thread Aurélien Bouteiller
Dear all, The mpi_abort_delay parameters does deadlock the aborting process, as to ease the manual attachment of gdb, only if the code does indeed call MPI_Abort. Is there any similar command line trick to keep alive a process that is exiting with assert() (or better with segfault etc) ? --

Re: [OMPI users] Spawn_multiple with tight integration to SGE grid engine

2012-02-03 Thread Reuti
Am 04.02.2012 um 00:15 schrieb Tom Bryan: A more detailed answer later, as it's late here. But one short note: -pe orte 5 => give me exactly 5 slots -pe orte 5-5 => the same -pe orte 5- => give me at least 5 slots, up to the maximum you can get right now in the cluster The output in `qstat

Re: [OMPI users] Spawn_multiple with tight integration to SGE grid engine

2012-02-03 Thread Tom Bryan
OK. Sorry for the delay. I needed to read through this thread a few times and try some experiments. Let me reply to a few of these pieces, and then I'll talk about those experiments. On 1/31/12 9:26 AM, "Reuti" wrote: >>> I never used spawn_mutiple, but isn't it

[OMPI users] How to join intercommunicators?

2012-02-03 Thread Mateus Augusto
Hello,   I have a process that creates other processes at different times (using MPI_Comm_spawn). After, the initial process (creator of other processes) must receive mesagens of created processes. However, there are one intercommunicator for each created process. The question is: how to unite

[OMPI users] IO performance

2012-02-03 Thread Tom Rosmond
Recently the organization I work for bought a modest sized Linux cluster for running large atmospheric data assimilation systems. In my experience a glaring problem with systems of this kind is poor IO performance. Typically they have 2 types of network: 1) A high speed, low latency, e.g.

[OMPI users] O-MPI Support for heterogeneous (Windows / Linux) clusters

2012-02-03 Thread James Torossian
Hi all, I noticed about 18 months ago in the user archives that the question of heterogeneous support for clusters of Windows / Linux machines was raised, and at that time this functionality was not supported. Is this still the case? Are there any near term plans in this direction? Also .

Re: [OMPI users] OpenMPI / SLURM -> Send/Recv blocking

2012-02-03 Thread Jeff Squyres
On Feb 3, 2012, at 6:28 AM, adrian sabou wrote: > You were right about iptables being very complex. It seems that uninstalling > it completly did the trick. All my Send / Receive operations now complete as > they should. Just one more question. Will uninstalling iptables have any > undesired

Re: [OMPI users] OpenMPI / SLURM -> Send/Recv blocking

2012-02-03 Thread adrian sabou
You were right about iptables being very complex. It seems that uninstalling it completly did the trick. All my Send / Receive operations now complete as they should. Just one more question. Will uninstalling iptables have any undesired effects on my Linux cluster?   Thaks! Adrian