Re: [OMPI users] Error compiling openmpi-1.6.4a1r27766 on Solaris 10

2013-01-16 Thread Matthias Jurenz
Hello Siegmar, this problem is already fixed in the OMPI trunk (r27770), but currently not moved to the v1.6 branch. To make it working for the v1.6 branch, just copy the following files from the trunk to your v1.6 checkout and re-run autogen.sh: ompi/contrib/vt/vt/config/m4/acinclude.execwrap.m4

[OMPI users] Error running program : mca_oob_tcp_msg_send_handler: writev:failed: Bad file descriptor

2013-01-16 Thread borja mf
Hello all. I want to learn MPI and I've trying to setting up OMPI for first time on three nodes. My config above: Ubuntu server - master node: pruebaborja 2x Ubuntu Desktop - slaves node: clienteprueba clientepruebados 4 slots Im running NFSv4 for sharing /home/mpiuser. I want to test a plain "Hel

Re: [OMPI users] Initializing OMPI with invoking the array constructor on Fortran derived types causes the executable to crash

2013-01-16 Thread Jeff Squyres (jsquyres)
FWIW, I can replicate the behavior with gfortran 4.7.2: - program runs "fine" with no MPI_Init/MPI_Finalize - program dumps core when MPI_Init/MPI_Finalize are called (at the "conc = [ xx, yy ]" statement) I notice that even if I disable Open MPI's memory hooking, the coredump still occurs. Si

Re: [OMPI users] Error running program : mca_oob_tcp_msg_send_handler: writev:failed: Bad file descriptor

2013-01-16 Thread Jeff Squyres (jsquyres)
Try disabling firewalling between your nodes. The easiest way is "sudo service iptables stop". On Jan 16, 2013, at 7:46 AM, borja mf wrote: > Hello all. > I want to learn MPI and I've trying to setting up OMPI for first time on > three nodes. My config above: > Ubuntu server - master node:

Re: [OMPI users] Windows MPI with Fortran calling programs

2013-01-16 Thread Jeff Squyres (jsquyres)
On Jan 14, 2013, at 8:57 AM, Said Elnoshokaty wrote: > Parallel processing is needed to speed up processing of large-scale master > and sub-problems. 32-bit Microsoft Access 2007 is used to capture data and > then calls a DLL program written in 32-bit Microsoft Fortran 90 for > processing (to

[OMPI users] help me understand these error msgs

2013-01-16 Thread Jure Pečar
Hello, I have a large fortran code processing data (weather forecast). It runs ok with smaller dataset, but on larger dataset I get some errors I've never seen before: node061:05144] [[55141,0],11]->[[55141,0],0] mca_oob_tcp_msg_send_handler: writev failed: Bad file descriptor (9) [sd = 9] [no

Re: [OMPI users] help me understand these error msgs

2013-01-16 Thread Ralph Castain
On Jan 16, 2013, at 7:41 AM, Jure Pečar wrote: > > Hello, > > I have a large fortran code processing data (weather forecast). It runs ok > with smaller dataset, but on larger dataset I get some errors I've never seen > before: > > node061:05144] [[55141,0],11]->[[55141,0],0] mca_oob_tcp_msg

Re: [OMPI users] Error running program : mca_oob_tcp_msg_send_handler: writev:failed: Bad file descriptor

2013-01-16 Thread borja mf
Getting the same error... I forgot to say that I must to use Ubuntu and Im compiling with mpicc. My code is written on C. Thank for answer. Im going crazy with this problem. There's not much info about. 2013/1/16 Jeff Squyres (jsquyres) > Try disabling firewalling between your nodes. The easi

Re: [OMPI users] Error running program : mca_oob_tcp_msg_send_handler: writev:failed: Bad file descriptor

2013-01-16 Thread Ralph Castain
If you login to eprueba and try to ping pruebaborja, can you do it? What network is it using? Sometimes the problem is that you have multiple ethernet interfaces on the machines and we pick the wrong one - i.e., one that cannot connect to the other machine. There are ways to help resolve the pr

Re: [OMPI users] Error running program : mca_oob_tcp_msg_send_handler: writev:failed: Bad file descriptor

2013-01-16 Thread Jeff Squyres (jsquyres)
Make sure you disable iptables on all the nodes. Also, check that all your IP interfaces are configured correctly. Do you have IP interfaces for only real ethernet connections and loopback? Or do you have other interfaces (e.g., for virtual machines)? If you have interfaces for virtual machin

Re: [OMPI users] libmpi_f90 shared lib version number change in 1.6.3

2013-01-16 Thread Jeff Squyres (jsquyres)
On Jan 12, 2013, at 5:06 AM, Ake Sandgren wrote: > Was the change for libmpi_f90 in VERSION intentional or a typo? > This is from openmpi 1.6.3 > libmpi_f90_so_version=4:0:1 > 1.6.1 had > libmpi_f90_so_version=2:0:1 It was both intentional and a typo. Specifically, it really should have bee

[OMPI users] openmpi 1.4 vs. 1.6 internals

2013-01-16 Thread Divakar Viswanath
There is a significant improvement in non-blocking MPI calls (over Infiniband) from version 1.4 to version 1.6. I am comparing two methods to exchange messages between two nodes. The message size varies from 1 MB to 1 GB. The first method is sends using MPI_Isend()and receives using MPI_Irecv().

[OMPI users] Problem with mpirun for java codes

2013-01-16 Thread Karos Lotfifar
Hi, I am still struggling with the installation problems! I get very strange errors. everything is fine when I run OpenMPI for C codes, but when I try to run a simple java code I get very strange error. The code is as simple as the following and I can not get it running: import mpi.*; class Java

[OMPI users] help - Problem with mpirun for java codes

2013-01-16 Thread Karos Lotfifar
Hi, I am still struggling with the installation problems! I get very strange errors. everything is fine when I run OpenMPI for C codes, but when I try to run a simple java code I get very strange error. The code is as simple as the following and I can not get it running: import mpi.*; class Java

Re: [OMPI users] Problem with mpirun for java codes

2013-01-16 Thread Ralph Castain
Which version of OMPI are you using? On Jan 16, 2013, at 11:43 AM, Karos Lotfifar wrote: > Hi, > > I am still struggling with the installation problems! I get very strange > errors. everything is fine when I run OpenMPI for C codes, but when I try to > run a simple java code I get very stran

Re: [OMPI users] Problem with mpirun for java codes

2013-01-16 Thread Karos Lotfifar
Hi, The version that I am using is 1.7rc6 (pre-release) Regards, Karos On 16 Jan 2013, at 21:07, Ralph Castain wrote: > Which version of OMPI are you using? > > > On Jan 16, 2013, at 11:43 AM, Karos Lotfifar wrote: > >> Hi, >> >> I am still struggling with the installation problems! I