Re: [OMPI users] OMPI 4.0.4 how to use mpirun properly in numa architecture

2020-08-20 Thread Carlo Nervi via users
I'm wondering whether I have to recompile DFTB+ (for example), if I change the openmpi version.. Thank you, Carlo Il giorno gio 20 ago 2020 alle ore 19:23 Jeff Hammond via users < users@lists.open-mpi.org> ha scritto: > On Thu, Aug 20, 2020 at 3:22 AM Carlo Nervi via users < > users@

Re: [OMPI users] OMPI 4.0.4 how to use mpirun properly in numa architecture

2020-08-20 Thread Carlo Nervi via users
t;prun --personality ompi" > instead of "mpirun", but things should otherwise be the same. > > > On Aug 20, 2020, at 9:01 AM, Carlo Nervi via users < > users@lists.open-mpi.org> wrote: > > Thank you, Christoph. I did not consider the --cpu-list. > Howe

Re: [OMPI users] OMPI 4.0.4 how to use mpirun properly in numa architecture

2020-08-20 Thread Carlo Nervi via users
Thank you, Christoph. I did not consider the --cpu-list. However, this is okay if I have a single script that is launching several jobs (please note that each job may have a different number of CPUs). In my case I have the same script (that launches mpirun), which is called many times. The script

[OMPI users] OMPI 4.0.4 how to use mpirun properly in numa architecture

2020-08-20 Thread Carlo Nervi via users
Dear OMPI community, I'm a simple end-user with no particular experience. I compile quantum chemical programs and use them in parallel. My system is a 4 socket, 12 core per socket Opteron 6168 system for a total of 48 cores and 64 Gb of RAM. It has 8 NUMA nodes: openmpi $ hwloc-info depth 0: