[OMPI users] upgraded mpi and R and now cannot find slots

2017-10-03 Thread Jim Maas
r use. -- Error in mpi.comm.spawn(slave = rscript, slavearg = args, nslaves = count, : MPI_ERR_SPAWN: could not spawn processes -- Jim Maas jimmaasuk at gmail.com ___ users mailing list users@lists.open-mpi.org

Re: [OMPI users] upgraded mpi and R and now cannot find slots

2017-10-03 Thread Jim Maas
> i assume one ubuntu machine, can you please run > lstopo > on and post the output ? > > did you use to have some specific settings in the system-wide conf > file (e.g. /.../etc/openmpi-mca-params.conf) ? > if yes, can you post these, the syntax might have changed in 3.0.0 >

Re: [OMPI users] OMPI users] upgraded mpi and R and now cannot find slots

2017-10-03 Thread Jim Maas
not know off hand, you could either > oversubscribe or use hyperthreads as slots. In both cases, 7 slots would be > available. > > Cheers, > > Gilles > > Jim Maas wrote: > Thanks Gilles, relative noob here at this level, apologies if nonsensical! > > I removed previo

Re: [OMPI users] OMPI users] upgraded mpi and R and now cannot find slots

2017-10-03 Thread Jim Maas
tial proc ? That would be 7 > slots and there are only 6. > What if you ask 5 slots only ? > > With some parameters i do not know off hand, you could either > oversubscribe or use hyperthreads as slots. In both cases, 7 slots would be > available. > > Cheers, > > Gilles &g

Re: [OMPI users] OMPI users] upgraded mpi and R and now cannot find slots

2017-10-03 Thread Jim Maas
s_as_cpus=1 > in your environment. > > On Oct 3, 2017, at 7:27 AM, Jim Maas wrote: > > Tried this and got this error, and slots are available, nothing else is > running. > > > cl <- startMPIcluster(count=7) > ---

Re: [OMPI users] OMPI users] upgraded mpi and R and now cannot find slots

2017-10-03 Thread Jim Maas
- > /etc/openmpi-mca-params.conf > > On Oct 3, 2017, at 12:44 PM, Jim Maas wrote: > > Thanks RHC where do I put that so it will be in the environment? > > J > > On 3 October 2017 at 16:01, r...@open-mpi.org wrote: > >> As Gilles said, we default to slots = co

[OMPI users] call to fork() error

2012-05-10 Thread Jim Maas
PI_COMM_WORLD rank: 7 If you are *absolutely sure* that your application will successfully and correctly survive a call to fork(), you may disable this warning by setting the mpi_warn_on_fork MCA parameter to 0. -- Dr. Jim Maas University of East Anglia

[OMPI users] fork() warning message

2012-05-16 Thread Jim Maas
fork was: Local host: cn159.private.dns.zone (PID 12792) MPI_COMM_WORLD rank: 7 If you are*absolutely sure* that your application will successfully and correctly survive a call to fork(), you may disable this warning by setting the mpi_warn_on_fork MCA parameter to 0. -- Dr. Jim Maas University of East Anglia

[OMPI users] ubuntu linux getting cores, not hyperthreading slots

2020-05-06 Thread Jim Maas via users
nd/or how can I fix it? I configured ompi 4.03 with this statement. $ ./configure --disable-dlopen Thx. J -- Jim Maas