Re: [OMPI users] IO performance

2012-02-06 Thread Richard Walsh
-5Monday/3A-Canon/canon-paper.pdf Cheers, rbw Richard Walsh Parallel Applications and Systems Manager CUNY HPC Center, Staten Island, NY W: 718-982-3319 M: 612-382-4620 Miracles are delivered to order by great intelligence, or when it is absent, through the passage of time and a series of mere

Re: [OMPI users] Latest Intel Compilers (ICS, version 12.1.0.233 Build 20110811) issues ...

2012-01-31 Thread Richard Walsh
oint your code crashed in: opal_memory_ptmalloc2_int_malloc is renamed to: rename.h:#define _int_malloc opal_memory_ptmalloc2_int_malloc in the malloc.c routine in 1.5.5. Perhaps you should lower the optimization level to zero and see what you get. Sincerely, rbw Richard Walsh Parallel Applications an

Re: [OMPI users] Latest Intel Compilers (ICS, version 12.1.0.233 Build 20110811) issues ...

2012-01-30 Thread Richard Walsh
things with the very latest release. Those are my thoughts ... good luck. rbw Richard Walsh Parallel Applications and Systems Manager CUNY HPC Center, Staten Island, NY W: 718-982-3319 M: 612-382-4620 Miracles are delivered to order by great intelligence, or when it is absent, through

Re: [OMPI users] Latest Intel Compilers (ICS, version 12.1.0.233 Build 20110811) issues ...

2012-01-04 Thread Richard Walsh
the 1.5.5 release or add the above section to the malloc.c code. Note earlier releases have a slightly different directory location for the 'memory.c' code, but it is easy to find. Thanks Tim ... !! Sincerely, rbw Richard Walsh Parallel Applications and Systems Manager CUNY HPC Center, Staten Island

Re: [OMPI users] Latest Intel Compilers (ICS, version 12.1.0.233 Build 20110811) issues ...

2012-01-03 Thread Richard Walsh
BEFORE SC11 in October of 2011. Thanks, rbw Richard Walsh Parallel Applications and Systems Manager CUNY HPC Center, Staten Island, NY W: 718-982-3319 M: 612-382-4620 Right, as the world goes, is only in question between equals in power, while the strong do what they can and the weak suffer wh

Re: [OMPI users] Latest Intel Compilers (ICS, version 12.1.0.233 Build 20110811) issues ...

2012-01-03 Thread Richard Walsh
. So ... it looks to me like there is something wrong with using the 'opal' wrappper generated-used in the Intel build. Can someone make a suggestion ... ?? I would like to use the wrappers of course. Thanks, rbw Richard Walsh Parallel Applications and Systems Manager CUNY HPC Center, Staten Isla

Re: [OMPI users] Latest Intel Compilers (ICS, version 12.1.0.233 Build 20110811) issues ...

2011-12-20 Thread Richard Walsh
All, I have not heard anything back on the inquiry below, so I take it that no one has had any issues with Intel's latest compiler release, or perhaps has not tried it yet. Thanks, rbw Richard Walsh Parallel Applications and Systems Manager CUNY HPC Center, Staten Island, NY W: 718-982-3319 M

[OMPI users] Latest Intel Compilers (ICS, version 12.1.0.233 Build 20110811) issues ...

2011-12-16 Thread Richard Walsh
Intel Corporation. All rights reserved. Has anyone else encountered this problem ... ?? Suggestions ... ?? Thanks, rbw Richard Walsh Parallel Applications and Systems Manager CUNY HPC Center, Staten Island, NY W: 718-982-3319 M: 612-382-4620 Right, as the world goes, is only in question between

Re: [OMPI users] How closely tied is a specific release of OpenMPI to the host operating system and other system software?

2011-02-01 Thread Richard Walsh
... around here is it me ... ;-) ... rbw Richard Walsh Parallel Applications and Systems Manager CUNY HPC Center, Staten Island, NY 718-982-3319 612-382-4620 Reason does give the heart pause; As the heart gives reason fits. Yet, to live where reason always rules; Is to kill one's heart

Re: [OMPI users] hdf5 build error using openmpi and Intel Fortran

2010-10-08 Thread Richard Walsh
--with-zlib=/share/apps/zlib/1.2.3/lib --with-szlib=/share/apps/szip/2.1/lib --disable-shared With some tweaking I was able to build the whole WRF and NCAR-NCL stack here. Regards, rbw Richard Walsh Parallel Applications and Systems Manager CUNY HPC Center, Staten Island, NY 718-982-3319 612-382

Re: [OMPI users] Continued functionality across a SLES10 to SLES11 upgrade ...

2010-09-22 Thread Richard Walsh
atable (and clever idea). Thanks much. I will report back. Regards, rbw Richard Walsh Parallel Applications and Systems Manager CUNY HPC Center, Staten Island, NY 718-982-3319 612-382-4620 Reason does give the heart pause; As the heart gives reason fits. Yet, to live where reason always

[OMPI users] Continued functionality across a SLES10 to SLES11 upgrade ...

2010-09-20 Thread Richard Walsh
OpenMPI 1.4.1 binaries under SLES 11. I would have thought NOTHING, but maybe that is not quite right. Perhaps we can run using GE under SLES 11 with the old binaries until I get things recompiled (ugh!) under SLES 11? Thanks, Richard Walsh Richard Walsh Parallel Applications and Systems Manager CUNY

Re: [OMPI users] Does OpenMPI 1.4.1 support the MPI_IN_PLACE designation ...

2010-08-17 Thread Richard Walsh
uot; into one of the routines that works but this will save me the trouble. Swapping the two modules as suggested works. Thanks! rbw Richard Walsh Parallel Applications and Systems Manager CUNY HPC Center, Staten Island, NY 718-982-3319 612-382-4620 Reason does give the heart pause; As the heart gives

[OMPI users] Does OpenMPI 1.4.1 support the MPI_IN_PLACE designation ...

2010-08-16 Thread Richard Walsh
the mpi.h header. Any thoughts? rbw Richard Walsh Parallel Applications and Systems Manager CUNY HPC Center, Staten Island, NY 718-982-3319 612-382-4620 Reason does give the heart pause; As the heart gives reason fits. Yet, to live where reason always rules; Is to kill one's heart with wits

Re: [OMPI users] A Problem with RAxML

2010-08-16 Thread Richard Walsh
... rbw Richard Walsh Parallel Applications and Systems Manager CUNY HPC Center, Staten Island, NY 718-982-3319 612-382-4620 Reason does give the heart pause; As the heart gives reason fits. Yet, to live where reason always rules; Is to kill one's heart with wits

Re: [OMPI users] Address not mapped segmentation fault with1.4.2 ...

2010-06-10 Thread Richard Walsh
anything. I have also reported this to the PBS Pro support folks. Thanks for the suggestions, rbw Richard Walsh Parallel Applications and Systems Manager CUNY HPC Center, Staten Island, NY 718-982-3319 612-382-4620 Mighty the Wizard Who found me at sunrise Sleeping

Re: [OMPI users] Address not mapped segmentation fault with1.4.2 ...

2010-06-10 Thread Richard Walsh
friends at OpenMPI or my friends at PBS Pro (Altair), or both? Thanks for your help. I will let you know what the result is ... rbw Richard Walsh Parallel Applications and Systems Manager CUNY HPC Center, Staten Island, NY 718-982-3319 612-382-4620 Mighty the Wizard Who

Re: [OMPI users] Address not mapped segmentation fault with 1.4.2 ...

2010-06-10 Thread Richard Walsh
, but I will verify this. Any other suggestions ... ?? rbw Richard Walsh Parallel Applications and Systems Manager CUNY HPC Center, Staten Island, NY 718-982-3319 612-382-4620 Mighty the Wizard Who found me at sunrise Sleeping, and woke me And learn'd me Magic

[OMPI users] Address not mapped segmentation fault with 1.4.2 ...

2010-06-10 Thread Richard Walsh
, but that will result in a performance hit on this IB system. Have others seen this? Suggestions? Thanks, Richard Walsh CUNY HPC Center Richard Walsh Parallel Applications and Systems Manager CUNY HPC Center, Staten Island, NY 718-982-3319 612-382-4620 Mighty the Wizard Who found me

[OMPI users] Can NWChem be run with OpenMPI over an InfiniBand interconnect ... ??

2010-05-06 Thread Richard Walsh
ome places that I need to use Mellanox's version of MPI, which is not an option and surprises me as they are a big OFED contributor. What are my options ... other than using GigE ... ?? Thanks, rbw Richard Walsh Parallel Applications and Systems Manager CUNY HPC Center, Staten

[OMPI users] Problem compiling 1.4.0 snap with PGI 10.0-1 and openib flags turned on ...

2009-12-19 Thread Richard Walsh
directory `/export/apps/openmpi-pgi/1.4.0/build/ompi' make: *** [all-recursive] Error 1 Compilation with the latest Intel compilers and these 'openib' options completes without issue. Are my configure options for 'openib' correct? Has anyone else see this? Thanks much, Richard Walsh Parallel