Found the problem. I had accidently linked to BLACS built wit mpich, not
openmpi.
Cheers,
Conn
From: Conn ORourke
To: "us...@open-mpi.org" ; "terry.don...@oracle.com"
Sent: Saturday, 14 January 2012, 17:42
Subject: Re: [OMPI us
Sent: Friday, 13 January 2012, 13:21
Subject: Re: [OMPI users] Openmpi SGE and BLACS
Do you have a stack of where exactly things are seg faulting in blacs_pinfo?
--td
On 1/13/2012 8:12 AM, Conn ORourke wrote:
Dear Openmpi Users,
>
>
>I am reserving several processors with SGE upon which
Do you have a stack of where exactly things are seg faulting in
blacs_pinfo?
--td
On 1/13/2012 8:12 AM, Conn ORourke wrote:
Dear Openmpi Users,
I am reserving several processors with SGE upon which I want to run a
number of openmpi jobs, all of which individually (and combined) use
less tha
Dear Openmpi Users,
I am reserving several processors with SGE upon which I want to run a number of
openmpi jobs, all of which individually (and combined) use
less than the reserved number of processors. The code I am using uses
BLACS, and when blacs_pinfo is called I get a seg fault. If the co
Am 27.04.2010 um 16:57 schrieb Edmund Sumbar:
On Tue, 27 Apr 2010, Frederik Himpe wrote:
OpenMPI is installed in its own prefix
(/shared/apps/openmpi/gcc-4.4/1.4.1), and can be loaded by the
environment module (http://modules.sourceforge.net/) openmpi.
Now I can successfully run this pe job:
On Tue, 27 Apr 2010, Frederik Himpe wrote:
OpenMPI is installed in its own prefix
(/shared/apps/openmpi/gcc-4.4/1.4.1), and can be loaded by the
environment module (http://modules.sourceforge.net/) openmpi.
Now I can successfully run this pe job:
#!/bin/bash
#$ -N test
#$ -q all.q
#$ -pe openm
Frederik Himpe writes:
> bash: module: line 1: syntax error: unexpected end of file
> bash: error importing function definition for `module'
It's nothing to do with open-mpi -- the job hasn't even started
executing at that point. Consult the archives of the SGE users list and
the issue tracker.
On Tue, 2010-04-27 at 07:52 -0600, Ralph Castain wrote:
> Looks to me like you have an error in the openmpi module file...
I cannot trigger this error by running module add openmpi/gcc-4.4, so I
don't have the feeling the module file in itself is erroneous.
Just in case, this is what it looks lik
Looks to me like you have an error in the openmpi module file...
On Apr 27, 2010, at 6:38 AM, Frederik Himpe wrote:
> I'm using SGE 6.1 and OpenMPI 1.4.1 built with gridengine support.
>
> I've got this parallel environment defined in SGE:
>
> pe_name openmpi
> slots 100
>
I'm using SGE 6.1 and OpenMPI 1.4.1 built with gridengine support.
I've got this parallel environment defined in SGE:
pe_name openmpi
slots 100
user_listsNONE
xuser_lists NONE
start_proc_args /bin/true
stop_proc_args/bin/true
allocation_rule $fill_up
co
This was addressed to the Open MPI list; on the SGE
list you suggested changing the pe allocation rule from full_up$ to
pe_slots$; the pe is now
[flengyel@nept OPENMPI]$ qconf -sp ompi
pe_name ompi
slots 999
user_listsResearch
xuser_lists NONE
start_proc_args
-Original Message-
From: users-boun...@open-mpi.org on behalf of rahmani
Sent: Wed 7/8/2009 1:58 AM
To: Open MPI Users
Subject: Re: [OMPI users] OpenMPI+SGE tight integration works on E6600 core duo
systems but not on Q9550 quads
...
Hi
in your job file don't user "mpiru
- Original Message -
From: "Florian Lengyel"
To: us...@open-mpi.org
Sent: Tuesday, July 7, 2009 4:12:22 PM (GMT-0500) America/New_York
Subject: [OMPI users] OpenMPI+SGE tight integration works on E6600 core duo
systems but not on Q
Hi,
Am 07.07.2009 um 22:12 schrieb Lengyel, Florian:
Hi,
I may have overlooked something in the archives (not to mention
Googling)--if so I apologize, however
I have been unable to find info on this particular problem.
OpenMPI+SGE tight integration works on E6600 core duo systems but
not
Hi,
I may have overlooked something in the archives (not to mention Googling)--if
so I apologize, however
I have been unable to find info on this particular problem.
OpenMPI+SGE tight integration works on E6600 core duo systems but not on Q9550
quads.
Could use some troubleshooting assistance.
Am 03.10.2008 um 10:46 schrieb Jaime Perea:
Hello again.
Since I already had a 6.1 version of the sge I reverted to it
and included the hacks (ssh, sshd -i and qlogin_wrap) and in
this way both the interactives qsh and qrsh and batch qsub
worked with openmpi.
For me this is a solution, but I'm
Hello again.
Since I already had a 6.1 version of the sge I reverted to it
and included the hacks (ssh, sshd -i and qlogin_wrap) and in
this way both the interactives qsh and qrsh and batch qsub
worked with openmpi.
For me this is a solution, but I'm still curious of what it was
going on in 6.2.
On 10/02/08 11:18, Reuti wrote:
Am 02.10.2008 um 16:51 schrieb Jaime Perea:
Hi
builtin, do I have to change them to ssh and sshd as in sge 6.1?
I always used only rsh, as ssh doesn't provide a Tight Integration with
correct accounting (unless you compiled SGE with -tigth-ssh on your own).
Hi
Well, let's try, I downloaded binaries for the sge,
I was thinking on rsh, I'm going to try it after
the old ssh/sshd settings and before than trying
to compile the sge... which I guess is not an easy
task.
Regards
--
Jaime Perea
El Jueves, 2 de Octubre de 2008, Reuti escribió:
> Am 02.1
Am 02.10.2008 um 16:51 schrieb Jaime Perea:
Hi
builtin, do I have to change them to ssh and sshd as in sge 6.1?
I always used only rsh, as ssh doesn't provide a Tight Integration
with correct accounting (unless you compiled SGE with -tigth-ssh on
your own).
But it would be worth a try w
Hi
builtin, do I have to change them to ssh and sshd as in sge 6.1?
Thanks again
--
Jaime Perea
El Jueves, 2 de Octubre de 2008, Reuti escribió:
> Am 02.10.2008 um 16:12 schrieb Jaime Perea:
> > Hi again, thanks for the answer
> >
> > Actually I took the definition of the pe from the openmpi
>
Am 02.10.2008 um 16:12 schrieb Jaime Perea:
Hi again, thanks for the answer
Actually I took the definition of the pe from the openmpi
webpage, in my case
qconf -sp orte
pe_nameorte
slots 24
user_lists NONE
xuser_listsNONE
start_proc_args/bin/true
st
Hi again, thanks for the answer
Actually I took the definition of the pe from the openmpi
webpage, in my case
qconf -sp orte
pe_nameorte
slots 24
user_lists NONE
xuser_listsNONE
start_proc_args/bin/true
stop_proc_args /bin/true
allocation_rule
Hi,
Am 02.10.2008 um 15:37 schrieb Jaime Perea:
Hello,
I am having some problems with a combination of openmpi+sge6.2
Currently I'm working with the 1.3a1r19666 openmpi release and the
AFAIK, you have to enable SGE support in Open MPI 1.3 during its
compilation.
myrinet gm libraries (2
Hello,
I am having some problems with a combination of openmpi+sge6.2
Currently I'm working with the 1.3a1r19666 openmpi release and the
myrinet gm libraries (2.1.19) but the problem was the same with the
prior 1.3 version. In short, I'm able to send jobs to a que via qrsh,
more or less this wa
Dear Reuti and Harvey,
I just tried by setting control_slaves to TRUE and it works!
Thank you very much,
Vittorio
On Oct 17, 2007, at 7:48 PM, Reuti wrote:
Hi,
Am 17.10.2007 um 18:49 schrieb Vittorio Zaccaria:
I am just trying to run a very simple application using mpirun in
an SGE 6 e
Hi,
Am 17.10.2007 um 18:49 schrieb Vittorio Zaccaria:
I am just trying to run a very simple application using mpirun in
an SGE 6 environment.
The job is called 'example' and it is submitted to the SGE
environment with the
following command:
> qsub -pe parallel 2 example
where 'parallel'
Hello,
I am just trying to run a very simple application using mpirun in
an SGE 6 environment.
The job is called 'example' and it is submitted to the SGE
environment with the
following command:
> qsub -pe parallel 2 example
where 'parallel' is a working parallel environment.
'example' is
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