Re: [Pw_forum] The downloaded pwtk is corrupted

2017-11-13 Thread balabi
Thank you very much for reply. Today, downloading is OK.best regards ___ Pw_forum mailing list Pw_forum@pwscf.org http://pwscf.org/mailman/listinfo/pw_forum

Re: [Pw_forum] Error while running VASP 5.4.1 with wannier90-1.2

2017-11-13 Thread Ari P Seitsonen
1) rm -rf ${VASP_DIR} 2) wget qe-6.2.tar.gz 3) Compile and compute ;) Well, my guess is that this is a cell - for example hexagonal - where the k point grid better contain the Gamma point (or at least [0,0,k_z] laterally), because otherwise the initial Monkhorst-Pack grid of k points has

Re: [Pw_forum] *spam*Re: Physical meaning of two imaginary phonon frequencies at NEB saddle point and Transition State Theory

2017-11-13 Thread degironc
I think that if there are two unstable directions at the saddle point this means there is another saddle point with a lower Activation energy nearby. Just slide the neb downhill stefano  Sent from my Samsung Galaxy smartphone. Original message From: Pascal Boulet Date: 13/11/2

Re: [Pw_forum] Physical meaning of two imaginary phonon frequencies at NEB saddle point and Transition State Theory

2017-11-13 Thread Pascal Boulet
Hello, My guess: you have to remove one of the imaginary frequencies (most probably the smallest one) by following the corresponding eigenvector (=moving the atoms accordingly). Then, you will have to make sure that the transition state connects the reactants and products you are interested in.

Re: [Pw_forum] Problem with tetrahedra method for calculations DOS (fwd)

2017-11-13 Thread Paolo Giannozzi
I think I figured out the origin of the problem. Array "tetra" passed to "qexml_read_occ" in line 2010 of routine PW/src/pw_restart.f90 is not allocated. For obscure reasons, sometimes the code decides that unallocated == not present (tetra is an optional variable) and continues. Tetrahedra are all

Re: [Pw_forum] Error while running VASP 5.4.1 with wannier90-1.2

2017-11-13 Thread Giuseppe Mattioli
Wrong mailing list? :- Best Giuseppe Quoting pachineela rambabu : > Hi, >I am trying to run the bandstructure of Bi2Se3 with VASP5.4.1 compiled > with wannier90-1.2. In INCAR file I added "LWANNIER90=.TRUE.. However I am > getting the following error: > > > > KPOINTS: Kpoints for band s

[Pw_forum] Error while running VASP 5.4.1 with wannier90-1.2

2017-11-13 Thread pachineela rambabu
Hi, I am trying to run the bandstructure of Bi2Se3 with VASP5.4.1 compiled with wannier90-1.2. In INCAR file I added "LWANNIER90=.TRUE.. However I am getting the following error: KPOINTS: Kpoints for band structure interpolating k-points between supplied coordinates k-points in reciproca

[Pw_forum] Physical meaning of two imaginary phonon frequencies at NEB saddle point and Transition State Theory

2017-11-13 Thread JAY Antoine
Dear all, I have been using NEB to obtain the Delta E and phonon DOS at begining/end/saddle point to properly evaluate the vibrationnal entropy contribution in the transition state theory. Commonly, one frequency in "negative" at the saddle point, the one that is "responssible" of the transitio

Re: [Pw_forum] dos.x : segmentation fault occurred

2017-11-13 Thread Andrea Ferretti
Dear Bhushan, I've re-run your scf+nscf using both qe-6.0 and 6.2 and both result in the same amount of disk usage (about 1GB for scf and 23 GB for nscf), which sounds reasonable given the size of the problem you are running (you have relatively large cell*nkpt parameters) take care Andrea

Re: [Pw_forum] dos.x issues

2017-11-13 Thread Andrea Ferretti
Dear Jeames, the fact that tetraheadra are used in the nscf run before dos.x seems to resonate with a bug that has been pointed out recently: https://www.mail-archive.com/pw_forum@pwscf.org/msg32918.html that is mostly related to the use of QEXML fmt in 6.0 and 6.1. QE-6.2, using by defaul

Re: [Pw_forum] Negative frequence at Gamma point and other kpoints.

2017-11-13 Thread Paolo Giannozzi
This question has been answered many times: www.quantum-espresso.org/faq/phonons Paolo On Mon, Nov 13, 2017 at 9:18 AM, 方子明 <201721140...@mail.bnu.edu.cn> wrote: > Dear Experts, > Recently, I have done some phonon calculations about NaFeAs, I noted that > some negative frequencies appears at Gam

Re: [Pw_forum] Orthogonalization of wave function and implementation of Forces

2017-11-13 Thread Cococcioni Matteo
Dear Akmal, Lorenzo is right: forces and stresses with LDA+U on orthogonalized wave functions require an extra (non trivial) implementation in the code to compute the derivative of the overlap matrix (between atomic wfc’s of different atoms) with respect to atomic positions and strains, and in

Re: [Pw_forum] Orthogonalization of wave function and implementation of Forces

2017-11-13 Thread Akmal Khan
Thank You.. Is it necessary to use this parameter during relaxation..What if this is used later in scf calculation when forces and stress are already implented during relaxation..? On Mon, Nov 13, 2017 at 2:03 PM, Lorenzo Paulatto wrote: > Dear Akmal, you have three alternatives : > > 1. Imple

Re: [Pw_forum] The downloaded pwtk is corrupted

2017-11-13 Thread Tone Kokalj
On Mon, 2017-11-13 at 13:33 +0800, balabi wrote: > Dear Developers, >     The pwtk program on this downloading page(http://pwtk.quantum-esp > resso.org/download.html) seems corrupted. >     The package downloaded from http://qe- > forge.org/gf/download/frsrelease/246/1123/pwtk-0.99.7rc1.tar.gz is >

Re: [Pw_forum] dos.x issues

2017-11-13 Thread Wilbert James Futalan
> > input that can be run in a reasonable time and an exact description of > compilation options (serial, parallel MPI, parallel MPI+OpenMP) and kind of > execution (number of processors etc.) Good day Paolo, Okay, so here are the input files for the tests I did on parallel MPI+OpenMP. Please le

Re: [Pw_forum] Orthogonalization of wave function and implementation of Forces

2017-11-13 Thread Lorenzo Paulatto
Dear Akmal, you have three alternatives : 1. Implement them yourself 2. Offer a sufficient incentive for someone else to implement them for you 3. Pay a student or postdoc to implement them for you (result may vary) Kind regards -- Lorenzo Paulatto Written on a virtual keyboard with real finger

[Pw_forum] Orthogonalization of wave function and implementation of Forces

2017-11-13 Thread Akmal Khan
Dear QE users and experts, the orthogonalization of the atomic wave functions is controlled from input through the parameter U_projection_type equal to “ortho-atomic”. But then forces and stress are not implemented during relaxation in LDA+U calculation.How can we orthogonalize wave

Re: [Pw_forum] The downloaded pwtk is corrupted

2017-11-13 Thread Paolo Giannozzi
It's not corrupted, it's the usual disk full problem of qe-forge.org On Mon, Nov 13, 2017 at 6:33 AM, balabi wrote: > Dear Developers, > The pwtk program on this downloading page(http://pwtk.quantum- > espresso.org/download.html) seems corrupted. > The package downloaded from http://qe-f

Re: [Pw_forum] dos.x issues

2017-11-13 Thread Paolo Giannozzi
On Sun, Nov 12, 2017 at 6:41 AM, Wilbert James Futalan < wilbert.james.futa...@gmail.com> wrote: this problem really gets on my nerves > > reports of problems without needed information get on MY nerves. Please provide an input that can be run in a reasonable time and an exact description of compi

[Pw_forum] The downloaded pwtk is corrupted

2017-11-13 Thread balabi
Dear Developers,    The pwtk program on this downloading page(http://pwtk.quantum-espresso.org/download.html) seems corrupted.    The package downloaded from http://qe-forge.org/gf/download/frsrelease/246/1123/pwtk-0.99.7rc1.tar.gz is only 1KB.    Please check that.best regards

[Pw_forum] Negative frequence at Gamma point and other kpoints.

2017-11-13 Thread 方子明
Dear Experts, Recently, I have done some phonon calculations about NaFeAs, I noted that some negative frequencies appears at Gamma point. I have also done calculationphonon dispersion for LiFeAs, and again I found some negative frequencies. My input files are attached with mail. Thanking in ant

[Pw_forum] Negative frequence at Gamma point and other kpoints.

2017-11-13 Thread 方子明
Dear Experts, Recently, I have done some phonon calculations about NaFeAs, I noted that some negative frequencies appears at Gamma point. I have also done calculationphonon dispersion for LiFeAs, and again I found some negative frequencies. My input files are attached with mail. Thanking in ant

[Pw_forum] Negative frequence at Gamma point and other kpoints.

2017-11-13 Thread 方子明
Dear Experts, Recently, I have done some phonon calculations about NaFeAs, I noted that some negative frequencies appears at Gamma point. I have also done calculationphonon dispersion for LiFeAs, and again I found some negative frequencies. My input files are attached with mail. Thanking in ant