Hi, Ted,
Thanks for your advice. The vcluster is in the path. The problem is that I
can execute under the bash shell, and csh shell. However, when I change to
sh, it does't work.
-bash-3.2$ ls
libcluto.a scluster vcluster
-bash-3.2$ ./vcluster
-bash: ./vcluster: Invalid argument
-bash-3.2$ sh
$ vcluster
./vcluster: cannot execute
$
It seems that vcluster doesn't work under "sh", which looks also what shell
is used in the clutostopping.pl
Running clusterstopping.pl --prefix testA1 testA1.vectors
sh: vcluster: cannot execute
Here is the outup when I run:
SunOS dab442ca.joyent.us 5.11 snv_89 i86pc i386 i86pc
I will put those not on the workaround that we made.
Thank you.
Lingzhi
On Fri, Aug 28, 2009 at 2:36 AM, Ted Pedersen <[email protected]> wrote:
> Hi Lingzhi,
>
> Cluto comes as a binary distribution only, so you have to make sure
> you get the right version for your hardware. If you used the intstall
> script that comes with SenseClusters (install.sh), you *might* be
> getting the wrong version, since it doesn't actually check to make
> sure it's getting the right one (this is a problem with that script,
> and it should be modified in our next release).
>
> http://glaros.dtc.umn.edu/gkhome/cluto/cluto/download
>
> By default you are getting the Linux i686 version ( cluto-2.1.1.tar.gz
> ), which does also work with SunOS. However, it might be that you need
> the other version (for reasons that I'm not entirely clear about,
> since both are said to work with SunOS)...
>
> http://glaros.dtc.umn.edu/gkhome/fetch/sw/cluto/cluto-2.1.2a.tar.gz
>
> This is a little bit of a guess, to be honest, but it's the first
> thing to check, assuming that your paths are ok. Try and run
>
> which vcluster
>
> If you get back the name of some path where vcluster resides, then
> it's not a path problem.
>
> If you still have problems after trying the other version, please send
> me the output of the following:
>
> which vcluster
> uname -a
> echo $PATH
>
> Also, some description of the other problems you had and how you
> worked around them might be helpful.
>
> I hope this helps, please let us know how things go!
>
> Cordially,
> Ted
>
>
>
> On Fri, Aug 28, 2009 at 2:25 AM, Lingzhi Zhang<[email protected]> wrote:
> > Hi, Ted,
> > We signed up hosting, so we tried installing Senseclusters into server.
> It
> > is a solaris machine. There were some issues during installation,
> however,
> > we found work-around. When we run the test, everything else is OK but
> still
> > one error. The installation of CLUTO seems OK. However, it seems that
> > vcluster can't be execute under sh. But it is OK under bash or csh. Do
> you
> > have a hint on how to work this around.
> > Lingzhi
> > ----------------------------------------------------
> > ------------- clusterstopping.pl -------------------
> > ----------------------------------------------------
> > Test A1 - Testing clusterstopping.pl with default settings.
> > Running clusterstopping.pl --prefix testA1 testA1.vectors
> > sh: vcluster: cannot execute
> > Error while running vcluster --clmethod rb --crfun i2 --sim cos
> --rowmodel
> > none --colmodel none --nooutput testA1.vectors 1
> > STATUS : ERROR Test Results don't Match....
> > When Tested Against testA1.reqd -
> > 0a1
> >> 7
> > STATUS : OK File testA1.cr.dat created.
> > STATUS : OK File testA1.pk3 created.
> > STATUS : ERROR File testA1.pk3.dat NOT created.
> >
> > On Mon, Aug 24, 2009 at 6:23 AM, Ted Pedersen <[email protected]>
> wrote:
> >>
> >> Hi Lingzhi,
> >>
> >> Thanks for the detailed report, that's really very helpful.
> >>
> >> It looks to me like everything is working pretty well, and I wouldn't
> >> be overly concerned about this particular error. In general there are
> >> some places in cluster stopping where the algorithm essentially makes
> >> a random choice, and there is some possibility of different platforms
> >> giving different results due to how random numbers are generated. If
> >> everything else seems to be working ok (which it does, as far as I can
> >> tell) then I think you can proceed without any concern.
> >>
> >> You may, however, want to run a case or two from your data through the
> >> web interface, just to make sure you are getting approximately the
> >> same results for your installation.
> >>
> >> Please let us know if there are any further questions or anomalies.
> >>
> >> Good luck!
> >> Ted
> >>
> >> On Sun, Aug 23, 2009 at 8:03 PM, Lingzhi Zhang<[email protected]>
> wrote:
> >> > Thanks Ted.
> >> >
> >> > I tried installation to Cygwin. The problem during the installation
> that
> >> > I
> >> > had was when installing the PDL. But after running the rebase, i
> >> > successfully installed the PDL; the SenseCluster was installed
> >> > successfully
> >> > afterwards. ( I used the manual installation. )
> >> >
> >> > SVDPACKC was installed and run without problem. As you advised, the
> >> > CLUTO
> >> > seems to be a problem since they only distribute binary. I installed
> the
> >> > CLUTO binary for win32. It ran, however, the clustestopping test
> failed.
> >> > This is the only error that I got when running the ALL_TEST.sh, Other
> >> > than
> >> > that everything else worked very well. ( I seached the word "error" in
> >> > the
> >> > test result )
> >> >
> >> > ----------------------------------------------------
> >> > ------------- clusterstopping.pl -------------------
> >> > ----------------------------------------------------
> >> > Test A1 - Testing clusterstopping.pl with default settings.
> >> > Running clusterstopping.pl --prefix testA1 testA1.vectors
> >> > STATUS : ERROR Test Results don't Match....
> >> > When Tested Against testA1.reqd -
> >> > STATUS : OK File testA1.cr.dat created.
> >> > STATUS : OK File testA1.pk3 created.
> >> > STATUS : OK File testA1.pk3.dat created.
> >> >
> >> > Do you have any advice on why this test failed? Is it related with the
> >> > CLUTO?
> >> >
> >> > Thank you.
> >> >
> >> > Lingzhi
> >> >
> >> > PS: The test result is attached to this email.
> >> >
> >> > On Sat, Aug 22, 2009 at 1:04 PM, Ted Pedersen <[email protected]>
> >> > wrote:
> >> >>
> >> >> Hi Lingzhi,
> >> >>
> >> >> I have personally only run SenseClusters on Linux or Solaris (Sun
> OS).
> >> >> In general Perl and C are very portable, and that is what the vast
> >> >> majority of SenseClusters is written in. However, clustering is done
> >> >> by the Cluto package, which is only distributed in binary form, and
> >> >> that is only available for Linux, Solaris (Sun OS) and MS Windows.
> >> >>
> >> >> http://glaros.dtc.umn.edu/gkhome/cluto/cluto/download
> >> >>
> >> >> Given that, my guess is that SenseClusters wouldn't port to MacOS,
> but
> >> >> should (in theory) be portable to CygWin. However, this is just a
> >> >> guess, so I don't know for sure.
> >> >>
> >> >> Also, keep in mind our web interface is always available, in the
> event
> >> >> you aren't able to install on your own system.
> >> >>
> >> >> http://marimba.d.umn.edu/cgi-bin/SC-cgi/index.cgi
> >> >>
> >> >> I hope this helps. Please let us know as questions arise!
> >> >>
> >> >> Cordially,
> >> >> Ted
> >> >>
> >> >> On Sat, Aug 22, 2009 at 11:46 AM, Lingzhi Zhang<[email protected]>
> >> >> wrote:
> >> >> > Hi,
> >> >> > Can sensecluseter run under Cygwin or Mac OS? Did anybody try it
> >> >> > successfully? Or it is only tested and run under linux system.
> >> >> > Thanks.
> >> >> > Lingzhi
> >> >> >
> >> >> >
> >> >> >
> ------------------------------------------------------------------------------
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> >> >> > _______________________________________________
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> >> >> >
> >> >> >
> >> >>
> >> >>
> >> >>
> >> >> --
> >> >> Ted Pedersen
> >> >> http://www.d.umn.edu/~tpederse <http://www.d.umn.edu/%7Etpederse>
> >> >>
> >> >>
> >> >>
> >> >>
> ------------------------------------------------------------------------------
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> >>
> >>
> >>
> >> --
> >> Ted Pedersen
> >> http://www.d.umn.edu/~tpederse <http://www.d.umn.edu/%7Etpederse>
> >>
> >>
> >>
> ------------------------------------------------------------------------------
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> >
> >
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> >
>
>
>
> --
> Ted Pedersen
> http://www.d.umn.edu/~tpederse <http://www.d.umn.edu/%7Etpederse>
>
>
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