On Aug 13, 2010, at 10:05, Christiaan Hofman wrote:

> 
> On Aug 13, 2010, at 4:38, Michael Singer wrote:
> 
>> Is SkimCombine restricted to 10.6? It wouldn't open for me in 10.5.
>> 
> 
> Apparently.
> 
> Christiaan
> 

try again

Christiaan

>>> On Aug 11, 2010, at 5:04, Carl Lee wrote:
>>> 
>>>> Christiaan,
>>>> 
>>>> I went with the alternative method of exporting as embedded PDF and it 
>>>> works for the most part so I am grateful.
>>>> 
>>>> A few observations to consider for the developer in charge of "Convert 
>>>> Notes..." in future releases of Skim:
>>>> - highlights are converted perfectly
>>>> - position/size of text stickies are perfect, but the default note color 
>>>> is black (probably the only flaw that makes this solution impractical for 
>>>> appending PDFs over time) :(
>>> 
>>> I don't see this, the text color is retained (and we really do so 
>>> explicitly in both steps). So if you lost that information it's somewhere 
>>> in the intermediate steps (perhaps merging) where we're not involved. It is 
>>> also related to the fact that Apple's PDFKit has some bugs when it comes to 
>>> saving annotations (though they won't admit it's a bug, even though they do 
>>> not preserve data).
>>> 
>>>> - anchored notes are shifted somewhat from their original position 
>>>> (probably due to the embedding process, causing the anchors to be larger 
>>>> when viewed in Preview), but icon choice (ie. question mark, filled 
>>>> document) is preserved---this may cause anchors to drift too far to be 
>>>> useful as I continue to append more and more PDFs over time
>>> 
>>> I said that anchored notes won't be preserved perfectly, because the Skim 
>>> anchored notes do not exist in PDF, they're converted to Text annotations, 
>>> which are somewhat different.
>>> 
>>>> - lastly, boxes and circles have the correct color, but they often show up 
>>>> as dotted-lines (i.e. right-click>Note Line...>Dash Pattern: 3 2, but the 
>>>> original Dash Pattern is blank)
>>>> 
>>> 
>>> I don't know where the dash pattern comes from, some intermediate step must 
>>> have introduced it, we certainly didn't. As for switching to dashed line 
>>> style, that's probably due to an annoying change Apple made where they 
>>> ovverride what we tell them. I'll have that part fixed.
>>> 
>>> Christiaan
>>> 
>>>> For those of you who want to know how I did this:
>>>> - Using "Combine PDFs" still throws away the annotations, so you have to 
>>>> open each source PDF in Preview, then merge with a specific kind of drag 
>>>> and drop (see TLJ's suggestion in 
>>>> http://forums.macrumors.com/showthread.php?t=780455) and then save.
>>>> - File>Convert Notes...
>>>> 
>>>> The first suggestion you had definitely sounds more advanced and will 
>>>> probably exactly yield the desired results if there is a way to directly 
>>>> modify the annotation page numbers---maybe I'll give it a go some time 
>>>> later.
>>>> 
>>>> Thanks again,
>>>> 
>>>> -Bill
>>>> 
>>>> From: Christiaan Hofman <[email protected]>
>>>> To: For general discussion about using Skim 
>>>> <[email protected]>
>>>> Sent: Tue, August 10, 2010 1:47:52 PM
>>>> Subject: Re: [Skim-app-users] Preserve annotations after merging two 
>>>> annotated PDFs?
>>>> On Aug 10, 2010, at 20:08, Carl Lee wrote:
>>>> 
>>>>> Hi Christiaan,
>>>>> 
>>>>> I tried this and both annotations appear, but both source 1 and 2's 
>>>>> annotations 'collide' on the same pages in the merged PDF since the 
>>>>> annotations retain the same page numbers they had when they were created 
>>>>> in source (i.e. let's say that source 2 has highlighted text on its page 
>>>>> 1---on the merged PDF, the highlights for this text appear on its page 1 
>>>>> but the text isn't in the highlights since it appears after the last page 
>>>>> of source 1 on the merged PDF).
>>>>> 
>>>>> So I think that the solution is this: can I directly modify the Skim Note 
>>>>> files to change the page numbers for each annotation to my liking?  When 
>>>>> I open it in a text editor, I mostly see gibberish but there are certain 
>>>>> intelligible characters such text from my annotation and what appear to 
>>>>> be pixel coordinates---I couldn't find page numbers though...
>>>>> 
>>>>> Thanks again,
>>>>> 
>>>>> -Bill
>>>>> 
>>>> 
>>>> Ah, I didn't realize that, but you're right, the page numbers for the 
>>>> second part won't get shifted. And no, you can't easily edit the file, 
>>>> it's some binary archive. I guess you'd need to write a Cocoa program to 
>>>> do that (you can convert it to XML using plutil, but good luck finding the 
>>>> actual page numbers in there).
>>>> 
>>>> Perhaps an alternative is to export the PDFs with embedded notes, merge 
>>>> those, and then run File > Convert NotesŠ on the combined PDF. You may 
>>>> lose a bit of data when you have anchored notes, but most will come 
>>>> through OK.
>>>> 
>>>> Christiaan
>>>> 
>>>>> From: Christiaan Hofman <[email protected]>
>>>>> To: For general discussion about using Skim 
>>>>> <[email protected]>
>>>>> Sent: Tue, August 10, 2010 2:13:34 AM
>>>>> Subject: Re: [Skim-app-users] Preserve annotations after merging two 
>>>>> annotated PDFs?
>>>>> 
>>>>> Before merging, export the skim notes for the two files to separate files 
>>>>> (File > ExportŠ). After merging, read them in (File > Read NotesŠ), make 
>>>>> sure you uncheck "Replace existing notes" the second time).
>>>>> 
>>>>> Christiaan
>>>>> 
>>>>> On Aug 10, 2010, at 9:04, Carl Lee wrote:
>>>>> 
>>>>>> Hi everyone (developers too?),
>>>>>> 
>>>>>> I have two Skim-annotated PDFs (sources 1 and 2) which I want to merge 
>>>>>> into one PDF in that order (I use CombinePDFs to do the merging since 
>>>>>> Skim cannot do this for me).  Problem is, when I do this, the 
>>>>>> annotations for both source PDFs are gone in the merged PDF.
>>>>>> 
>>>>>> Q: Is there a way to *keep* the annotations after merging?
>>>>>> 
>>>>>> If there is no elegant solution, here's a kludge that I hope to carry to 
>>>>>> completion:
>>>>>> I have made some progress in that I *can* extract my annotations when I 
>>>>>> export as "Skim Notes" and save them onto the merged PDF by using "File 
>>>>>> > Read Notes...", but the page numbers for my annotations in the merged 
>>>>>> PDF are the same as they were in source---so that source 2 annotations 
>>>>>> are not in the correct location in the merged PDF.  What I want to do is 
>>>>>> "shift" ALL the page numbers of source 2's annotations by an integer of 
>>>>>> my choosing (i.e. so that they correctly correspond to the "new" page 
>>>>>> numbers where source 2 resides in the merged PDF)
>>>>>> 
>>>>>> Please let me know if you have any ideas to make this work---this would 
>>>>>> be great as I often find myself OCR scanning books one chapter at a time 
>>>>>> just so I can annotate them in Skim!
>>>>>> 
>>>>>> Thanks!
>>>>>> 
>>>>>> -Bill
>>>>> 
>>>>> 
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