[sorry about the previous half-finished post]
I can speak to that, having just bumped into it. SRC_ROOT is defined
as $(PWD)/ in the Makefile, but $PWD may not exist in the environment,
leading to a definition of "SRC_ROOT=/".
In particular, on the latest version of Ubuntu, 'sudo printenv' shows
no definition of PWD. I'm not that crazy about them having left it
out, but there it is, and there's really no standard that says it has
to be defined.
For GNU make, you could use one of
$(realpath .)
$(abspath .)
$(shell pwd)
The best solution, though, would be to get rid of SRC_ROOT altogether
and use relative paths, if possible.
Mike
On Aug 13, 11:51 am, "Brian Pratt" <brian.pr...@insilicos.com> wrote:
> Natalie is correct, the issue is around SRC_ROOT="/" .
>
> As she says, your current working directory needs to be the one that
> contains the main TPP makefile (and the Makefile.pwiz.incl file).
>
> -----Original Message-----
> From: spctools-discuss@googlegroups.com
>
> [mailto:spctools-disc...@googlegroups.com] On Behalf Of Eliza
> Sent: Thursday, August 13, 2009 7:46 AM
> To: spctools-discuss
> Subject: [spctools-discuss] Re: Failure with make
>
> I got the latest version of TPP (4.3.0) and this time when trying to
> make I am getting the following error:
>
> Makefile.incl:431: /Makefile.pwiz.incl: No such file or directory
> make: *** No rule to make target `/Makefile.pwiz.incl'. Stop.
>
> On Aug 5, 10:25 pm, Natalie Tasman <natalie.tas...@insilicos.com>
> wrote:
> > Hi Eliza,
>
> > It sounds like something strange is going on. Maybe you should re-
> > load the sourcecode. Also, I've never seen "SRC_ROOT="/"" come up
> > before. Are you starting the build from /, rather than the actual TPP/
> > src directory? You want to cd there first.
>
> > It does sound like a corrupted checkout (missing files, etc), too,
> > possibly.
>
> > Natalie
>
> > On Aug 5, 2009, at 1:29 AM, Eliza wrote:
>
> > > Hi Natalie,
>
> > > I have tried your suggestion and 'make distclean; make" fails at:
>
> > > make -C ../extern/xtandem/src SRC_ROOT="/" ARCH=linux BUILD_DIR=/../
> > > build/linux clean
> > > make[1]: Entering directory `/usr/local/src/tpp-4.2.1/extern/xtandem/
> > > src'
> > > make[1]: *** No rule to make target `clean'. Stop.
>
> > > Thanks,
> > > Eliza.
>
> > > On Jul 31, 8:19 pm, Natalie Tasman <natalie.tas...@insilicos.com>
> > > wrote:
> > >> Hi Eliza,
>
> > >> I haven't run into this before, but you may want to try a "make
> > >> distclean; make" sequence. I would also look at the compiler output
> > >> earlier in the stream and see if there were any uncaught errors
> > >> building the "AminoAcid" that might provide a clue.
>
> > >> Please let us know how it goes, and good luck,
>
> > >> Natalie
>
> > >> On Jul 31, 2009, at 4:25 AM, Eliza wrote:
>
> > >>> Hi,
>
> > >>> I am receiving the following error when trying to issue 'make' in
> > >>> the
> > >>> src directory:
>
> > >>> make[1]: *** No rule to make target `/../build/linux/AminoAcid.o',
> > >>> needed by `/../build/linux/libpwiz.a'. Stop.
> > >>> make[1]: Leaving directory `/usr/local/src/tpp-4.2.1/src'
> > >>> make: *** [default] Error 2
>
> > >>> TPP version 4.2.1
> > >>> Debian Etch kernel 2.6.15.4
> > >>> Compiler version 4.3.2
>
> > >>> Thanks,
> > >>> Eliza.
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