Christian, readw is and will always be a windows app because it makes use of windows DLLs supplied by Thermo to read the raw files. If you really want to get away from the data transfers (which you can automate ... search for 'conversion server' on this group to see Greg Taylor's recipe for installing openssh on a Windows box), you'll have to look into an application like Wine or the commercial version CrossOver. I believe the latter is actively being used for running readw on linux on the Sorcerer box by Sage-N and I haven't heard any reports of problems. On the other hand, I haven't heard of a successful Wine implementation yet for what that's worth.
And in case you're not already using compression, add the '--compress' command line option to compress the peak lists. On Mon, Feb 8, 2010 at 9:29 PM, Charles <charlesyoo...@gmail.com> wrote: > Hello, > > I've installed and used TPP v4.3.1 on my personal computer running > Win7 for a couple of months now and tested it with a couple of test > sample files and found everything to be running fine. I would now > like to now transfer this pipeline onto a linux server in order to > make the pipeline available to the rest of the lab. I've installed > the same version for linux just fine, but while trying to write a > script to automate a lot of the data conversion/management processes, > I found that that there isn't a "readw" program in "/tpp/bin". I've > searched around online and found an obscure link for the linux version > and found that it's called "t2x", but searing on this forum indicated > that it's a depreciated version and is no longer supported. > > I was wondering if there's an official readw for linux boxes somewhere > on the horizon or some work around to run a windows executable in a > linux environment. Right now, I need to transfer RAW files from the > server to my computer, convert them into mzXML, and then transfer the > files back. These are two completely unnecessary transfers, which > take up a lot of time especially since these are rather large files > (profile Orbitrap data), which basically double in size for the mzXML > format. > > Thanks, > Charles > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to spctools-disc...@googlegroups.com. > To unsubscribe from this group, send email to > spctools-discuss+unsubscr...@googlegroups.com. > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to spctools-disc...@googlegroups.com. To unsubscribe from this group, send email to spctools-discuss+unsubscr...@googlegroups.com. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
