Y, I have wine working with msconvert from proteowizard. # NOT COVERED: You need to install wine as per you linux distro # Then use winetricks to get some deps curl -O http://www.kegel.com/wine/winetricks chmod 755 winetricks ./winetricks winxp ./winetricks vcrun2008 ./winetricks dotnet20
# then get msfilereader from thermo curl -O http://sjsupport.thermofinnigan.com/software/msfilereader_ver-13_04-14-2009_Setup.zip unzip msfilereader_ver-13_04-14-2009_Setup.zip wine msiexec /q /i /msfilereader_ver-13_04-14-2009_Setup/setup_msi/ thermo\ install.msi # then get the latest windows version of pwiz curl -L -o pwiz.zip http://sourceforge.net/projects/proteowizard/files/proteowizard/1.6.0/pwiz-1.6.0-tools-windows-i386.zip/download unzip -d pwiz pwiz.zip You then run msconvert.exe like so wine pwiz/msconvert.exe MyRawFile.RAW Here is an example outputting 32 bit intensity compressing all binary data arrays wine pwiz/msconvert.exe --int32 -z MyRawFile.RAW -angel On Feb 9, 6:05 pm, Jimmy Eng <jke...@gmail.com> wrote: > Christian, > > readw is and will always be a windows app because it makes use of > windows DLLs supplied by Thermo to read the raw files. If you really > want to get away from the data transfers (which you can automate ... > search for 'conversion server' on this group to see Greg Taylor's > recipe for installing openssh on a Windows box), you'll have to look > into an application like Wine or the commercial version CrossOver. I > believe the latter is actively being used for running readw on linux > on the Sorcerer box by Sage-N and I haven't heard any reports of > problems. On the other hand, I haven't heard of a successful Wine > implementation yet for what that's worth. > > And in case you're not already using compression, add the '--compress' > command line option to compress the peak lists. > > > > On Mon, Feb 8, 2010 at 9:29 PM, Charles <charlesyoo...@gmail.com> wrote: > > Hello, > > > I've installed and used TPP v4.3.1 on my personal computer running > > Win7 for a couple of months now and tested it with a couple of test > > sample files and found everything to be running fine. I would now > > like to now transfer this pipeline onto a linux server in order to > > make the pipeline available to the rest of the lab. I've installed > > the same version for linux just fine, but while trying to write a > > script to automate a lot of the data conversion/management processes, > > I found that that there isn't a "readw" program in "/tpp/bin". I've > > searched around online and found an obscure link for the linux version > > and found that it's called "t2x", but searing on this forum indicated > > that it's a depreciated version and is no longer supported. > > > I was wondering if there's an official readw for linux boxes somewhere > > on the horizon or some work around to run a windows executable in a > > linux environment. Right now, I need to transfer RAW files from the > > server to my computer, convert them into mzXML, and then transfer the > > files back. These are two completely unnecessary transfers, which > > take up a lot of time especially since these are rather large files > > (profile Orbitrap data), which basically double in size for the mzXML > > format. > > > Thanks, > > Charles > > > -- > > You received this message because you are subscribed to the Google Groups > > "spctools-discuss" group. > > To post to this group, send email to spctools-disc...@googlegroups.com. > > To unsubscribe from this group, send email to > > spctools-discuss+unsubscr...@googlegroups.com. > > For more options, visit this group > > athttp://groups.google.com/group/spctools-discuss?hl=en. -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to spctools-disc...@googlegroups.com. To unsubscribe from this group, send email to spctools-discuss+unsubscr...@googlegroups.com. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
