Hi Jimmy, Yes, you are right. SSM411 is how I named my sample, and F030382 is the .DAT file name generated by MASCOT. I have renamed them by SSM411.*.
I didn't convert the .mgf file using MzXML2Search ealier. I used the pkl files generated by PLGS (Waters) from .raw data to do the Mascot searches, and got .DAT files. I directly converted these .DAT files to pep.XML files, but I couldn't see any spectral data under "IONS" column in PepXML viewer. When I did "mzXML---mgf----dat----pepXML" I can see the spectral data (but, so far I only got one file worked). I will never think of naming issue. Thanks, Jing -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to spctools-disc...@googlegroups.com. To unsubscribe from this group, send email to spctools-discuss+unsubscr...@googlegroups.com. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
