spctools-discuss  

Messages by Date

• 2014/04/03 [spctools-discuss] tryspin/P Rachel
• 2014/04/03 Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server. janetmckennedy
• 2014/04/03 Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server. janetmckennedy
• 2014/04/02 [spctools-discuss] Including (custom) modifications in Tandem2XML conversion? Vadim Patsalo
• 2014/04/02 Re: [spctools-discuss] Job xinteract wrong! ! ! help~~~ Vishal Swaroop
• 2014/04/02 Re: [spctools-discuss] Job xinteract wrong! ! ! help~~~ David Shteynberg
• 2014/04/02 Re: [spctools-discuss] Job xinteract wrong! ! ! help~~~ Vishal Swaroop
• 2014/04/02 [spctools-discuss] Job xinteract wrong! ! ! help~~~ jason cao
• 2014/04/02 Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server. Vishal Swaroop
• 2014/04/02 Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server. Vishal Swaroop
• 2014/04/02 Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server. janetmckennedy
• 2014/04/02 Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server. janetmckennedy
• 2014/04/01 Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server. Vishal Swaroop
• 2014/04/01 Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server. janetmckennedy
• 2014/04/01 Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server. janetmckennedy
• 2014/04/01 Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server. janetmckennedy
• 2014/04/01 Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server. Joseph Slagel
• 2014/04/01 Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server. Vishal Swaroop
• 2014/04/01 Re: [spctools-discuss] protein and peptide FDR Hannes Röst
• 2014/04/01 Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server. janetmckennedy
• 2014/04/01 [spctools-discuss] protein and peptide FDR Luciana B
• 2014/04/01 Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server. janetmckennedy
• 2014/03/31 Re: [spctools-discuss] Is there a sequest equivalent or port that runs from linux and/or written in Java? David Zhao
• 2014/03/31 Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server. Vishal Swaroop
• 2014/03/31 Re: [spctools-discuss] Is there a sequest equivalent or port that runs from linux and/or written in Java? Joseph Slagel
• 2014/03/31 [spctools-discuss] Is there a sequest equivalent or port that runs from linux and/or written in Java? David Zhao
• 2014/03/31 Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server. Joseph Slagel
• 2014/03/30 Re: [spctools-discuss] Can XInteract support MSGF+? David Shteynberg
• 2014/03/30 Re: [spctools-discuss] Can XInteract support MSGF+? liguilin223
• 2014/03/30 Re: [spctools-discuss] Help! - The requested URL (http://localhost/tpp-bin/tpp_gui.pl) was not found on this server. janetmckennedy
• 2014/03/27 Re: [spctools-discuss] Can XInteract support MSGF+? David Shteynberg
• 2014/03/27 Re: [spctools-discuss] Can XInteract support MSGF+? Jimmy Eng
• 2014/03/27 [spctools-discuss] Can XInteract support MSGF+? liguilin223
• 2014/03/26 [spctools-discuss] How about extracting confident PSMs according to the charge states of precursors from decoy database search results? Jorey Dong
• 2014/03/26 [spctools-discuss] Xinteract - Do not merge input checkbox leads to deletion of pep.xml output shakembt
• 2014/03/21 [spctools-discuss] ASAP ratio parameters Ana
• 2014/03/17 [spctools-discuss] date instead of file name in after dat 2 pepxml Delphine
• 2014/03/16 [spctools-discuss] TPP running on Live DVD/USB: v4.7 installed on MASSyPup Robert
• 2014/03/14 Re: [spctools-discuss] Extracting mzXML peaks Ilan Beer
• 2014/03/14 [spctools-discuss] Re: Unable to do PeptideProphet in bulk Kate Mostovenko
• 2014/03/14 [spctools-discuss] Re: Unable to do PeptideProphet in bulk magnus.palmb...@gmail.com
• 2014/03/14 [spctools-discuss] Unable to do PeptideProphet in bulk Kate Mostovenko
• 2014/03/14 [spctools-discuss] TPP-4.7 Mac OS X - PepXMLViewer - memory leakage Ulrich auf dem Keller
• 2014/03/13 Re: [spctools-discuss] XPRESS values Jimmy Eng
• 2014/03/13 [spctools-discuss] XPRESS values oschill...@gmail.com
• 2014/03/12 Re: [spctools-discuss] Anyone running TPP on Mac 10.9 (Mavericks)? Bjorn
• 2014/03/12 Re: [spctools-discuss] Anyone running TPP on Mac 10.9 (Mavericks)? Ulrich auf dem Keller
• 2014/03/11 [spctools-discuss] Creating a SpectraST library -- not enough decoy matches for iProphet discriminant? Vadim Patsalo
• 2014/03/10 Re: [spctools-discuss] Command Failed_Return Code 65280 Brian Hampton
• 2014/03/10 Re: [spctools-discuss] Command Failed_Return Code 65280 xianyinlai
• 2014/03/10 Re: [spctools-discuss] Command Failed_Return Code 65280 xianyinlai
• 2014/03/10 Re: [spctools-discuss] Command Failed_Return Code 65280 David Shteynberg
• 2014/03/10 Re: [spctools-discuss] Command Failed_Return Code 65280 Brian Hampton
• 2014/03/10 Re: [spctools-discuss] Command Failed_Return Code 65280 David Shteynberg
• 2014/03/10 [spctools-discuss] Command Failed_Return Code 65280 xianyinlai
• 2014/03/07 Re: [spctools-discuss] Re: TPP 4.7.0 is now available Joseph Slagel
• 2014/03/07 [spctools-discuss] xinteract of tpp4.7.0 fails with myrimatch2.138 loblum
• 2014/03/05 Re: [spctools-discuss] TPP mixture model failing Brian Hampton
• 2014/03/05 Re: [spctools-discuss] Problems getting Petunia to run after install of TPP-4.7 Brian Hampton
• 2014/03/05 Re: [spctools-discuss] Re: TPP 4.7.0 is now available Joseph Slagel
• 2014/03/05 Re: [spctools-discuss] Re: TPP 4.7.0 is now available loblum
• 2014/03/05 Re: [spctools-discuss] Re: TPP 4.7.0 is now available Robert Winkler
• 2014/03/05 Re: [spctools-discuss] Apache user on RHEL for TPP Joseph Slagel
• 2014/03/05 Re: [spctools-discuss] Problems getting Petunia to run after install of TPP-4.7 Joseph Slagel
• 2014/03/05 Re: [spctools-discuss] Re: TPP 4.7.0 is now available Joseph Slagel
• 2014/03/05 [spctools-discuss] Apache user on RHEL for TPP Brian Hampton
• 2014/03/05 Re: [spctools-discuss] Problems getting Petunia to run after install of TPP-4.7 Amit Yadav
• 2014/03/05 Re: [spctools-discuss] Re: TPP 4.7.0 is now available loblum
• 2014/03/04 Re: [spctools-discuss] Problems getting Petunia to run after install of TPP-4.7 Joseph Slagel
• 2014/03/04 Re: [spctools-discuss] Problems getting Petunia to run after install of TPP-4.7 Brian Hampton
• 2014/03/04 Re: [spctools-discuss] Problems getting Petunia to run after install of TPP-4.7 Brian Hampton
• 2014/03/04 Re: [spctools-discuss] Re: TPP 4.7.0 is now available Joseph Slagel
• 2014/03/04 Re: [spctools-discuss] Comet Jimmy Eng
• 2014/03/04 Re: [spctools-discuss] Problems getting Petunia to run after install of TPP-4.7 Brian Hampton
• 2014/03/04 Re: [spctools-discuss] Problems getting Petunia to run after install of TPP-4.7 Joseph Slagel
• 2014/03/04 [spctools-discuss] Problems getting Petunia to run after install of TPP-4.7 Brian Hampton
• 2014/03/04 Re: [spctools-discuss] Comet magnus.palmb...@gmail.com
• 2014/03/03 Re: [spctools-discuss] Comet Jimmy Eng
• 2014/03/03 [spctools-discuss] Comet magnus.palmb...@gmail.com
• 2014/03/03 [spctools-discuss] Re: TPP 4.7.0 is now available loblum
• 2014/03/02 Re: [spctools-discuss] Conversion of GC-MS RAW file into excel file inamul hasan.madar
• 2014/03/02 [spctools-discuss] Conversion of GC-MS RAW file into excel file Karthika Ranganathan
• 2014/03/01 Re: [spctools-discuss] TPP mixture model failing David Shteynberg
• 2014/03/01 Re: [spctools-discuss] TPP mixture model failing Brian Hampton
• 2014/02/28 [spctools-discuss] TPP 4.7.0 is now available Joseph Slagel
• 2014/02/28 Re: [spctools-discuss] TPP mixture model failing David Shteynberg
• 2014/02/28 [spctools-discuss] TPP mixture model failing Brian Hampton
• 2014/02/27 Re: [spctools-discuss] Peptide Prophet ERROR user1
• 2014/02/27 Re: [spctools-discuss] Peptide Prophet ERROR user1
• 2014/02/27 Re: [spctools-discuss] Peptide Prophet ERROR David Shteynberg
• 2014/02/27 [spctools-discuss] Peptide Prophet ERROR user1
• 2014/02/26 [spctools-discuss] Mascot2ML on linux boost::exception_detail::clone_impl error GATTACA
• 2014/02/25 Re: [spctools-discuss] Validation of mzXML schema failed using XSD.EXE utility Joseph Slagel
• 2014/02/25 Re: [spctools-discuss] Validation of mzXML schema failed using XSD.EXE utility Josip Miller
• 2014/02/25 [spctools-discuss] Validation of mzXML schema failed using XSD.EXE utility Josip Miller
• 2014/02/24 [spctools-discuss] Question about MRM transition lists created by SpectraST zhaohaiyi888
• 2014/02/24 Re: [spctools-discuss] Very elementary question David Shteynberg
• 2014/02/24 [spctools-discuss] Very elementary question Maryam Afkarian
• 2014/02/19 [spctools-discuss] Re: combine FASTA files zeyu sun
• 2014/02/19 Re: [spctools-discuss] Re: TPP FDR Tutorial (How to use the decoy features) Brian Hampton
• 2014/02/19 Re: [spctools-discuss] Re: TPP FDR Tutorial (How to use the decoy features) Joseph Slagel
• 2014/02/19 Re: [spctools-discuss] Re: TPP FDR Tutorial (How to use the decoy features) Brian Hampton
• 2014/02/19 Re: [spctools-discuss] Re: TPP FDR Tutorial (How to use the decoy features) Joseph Slagel
• 2014/02/19 [spctools-discuss] Re: Total Independent Spectra Definition Robert Jones
• 2014/02/19 [spctools-discuss] Total Independent Spectra Definition Robert Jones
• 2014/02/19 Re: [spctools-discuss] combine FASTA files Michael Hoopmann
• 2014/02/19 Re: [spctools-discuss] combine FASTA files Joseph Slagel
• 2014/02/19 [spctools-discuss] combine FASTA files zeyu sun
• 2014/02/18 [spctools-discuss] Re: TPP FDR Tutorial (How to use the decoy features) Robert Jones
• 2014/02/18 [spctools-discuss] Re: TPP FDR Tutorial (How to use the decoy features) Bjorn
• 2014/02/18 [spctools-discuss] Re: TPP FDR Tutorial (How to use the decoy features) Bjorn
• 2014/02/17 [spctools-discuss] TPP FDR Tutorial (How to use the decoy features) Robert Jones
• 2014/02/15 Re: [spctools-discuss] Question on setting modifications for searching Konstantinos Vougas
• 2014/02/15 Re: [spctools-discuss] Question on setting modifications for searching Jimmy Eng
• 2014/02/15 [spctools-discuss] Question on setting modifications for searching Konstantinos Vougas
• 2014/02/13 Re: [spctools-discuss] Re: A question about pepXML files. 钟传奇
• 2014/02/13 Re: [spctools-discuss] Re: A question about pepXML files. Hannes Röst
• 2014/02/12 Re: [spctools-discuss] CLIPPER, where do i get it? Konstantinos Vougas
• 2014/02/12 Re: [spctools-discuss] CLIPPER, where do i get it? Ulrich auf dem Keller
• 2014/02/11 [spctools-discuss] CLIPPER, where do i get it? Konstantinos Vougas
• 2014/02/11 RE: [spctools-discuss] Re: support for Morpheus search algorithm in TPP David Trudgian
• 2014/02/10 RE: [spctools-discuss] NSP model in iProphet/ProteinProphet; model vs decoy based FDR in ProteinProphet Eric Deutsch
• 2014/02/07 Re: [spctools-discuss] NSP model in iProphet/ProteinProphet; model vs decoy based FDR in ProteinProphet David Shteynberg
• 2014/02/07 RE: [spctools-discuss] NSP model in iProphet/ProteinProphet; model vs decoy based FDR in ProteinProphet Eric Deutsch
• 2014/02/07 Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP David Shteynberg
• 2014/02/07 Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP Dave Trudgian
• 2014/02/06 Re: [spctools-discuss] sorting prot.xml output by number of unique peptides Maryam Afkarian
• 2014/02/06 Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP David Shteynberg
• 2014/02/06 Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP Dave Trudgian
• 2014/02/06 Re: [spctools-discuss] NSP model in iProphet/ProteinProphet; model vs decoy based FDR in ProteinProphet Dave Trudgian
• 2014/02/06 Re: [spctools-discuss] Re: TPP 4.6.2 installation problem Ubuntu 12.04 LTS virtual box Joseph Slagel
• 2014/02/06 Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP David Shteynberg
• 2014/02/06 Re: [spctools-discuss] NSP model in iProphet/ProteinProphet; model vs decoy based FDR in ProteinProphet David Shteynberg
• 2014/02/06 Re: [spctools-discuss] sorting prot.xml output by number of unique peptides Luis Mendoza
• 2014/02/06 [spctools-discuss] sorting prot.xml output by number of unique peptides maryamafkarian
• 2014/02/06 Re: [spctools-discuss] NSP model in iProphet/ProteinProphet; model vs decoy based FDR in ProteinProphet Dave Trudgian
• 2014/02/06 RE: [spctools-discuss] Re: support for Morpheus search algorithm in TPP Eric Deutsch
• 2014/02/06 [spctools-discuss] Re: support for Morpheus search algorithm in TPP Dave Trudgian
• 2014/02/05 Re: [spctools-discuss] Re: TPP 4.6.2 installation problem Ubuntu 12.04 LTS virtual box Anton Gurkov
• 2014/01/28 [spctools-discuss] Re: t2D converter Mehran Umerani
• 2014/01/27 [spctools-discuss] Re: Decoy issue srihari sharma sharma
• 2014/01/23 Re: [spctools-discuss] Re: How to extract the intensities for peaks with a specific m/z from the mzxml file Taejoon Kwon
• 2014/01/23 Re: [spctools-discuss] Re: How to extract the intensities for peaks with a specific m/z from the mzxml file Liang QIAO
• 2014/01/23 [spctools-discuss] Re: How to extract the intensities for peaks with a specific m/z from the mzxml file Liang QIAO
• 2014/01/22 Re: [spctools-discuss] Decoy issue David Shteynberg
• 2014/01/22 Re: [spctools-discuss] Decoy issue srihari sharma
• 2014/01/22 Re: [spctools-discuss] Re: How to extract the intensities for peaks with a specific m/z from the mzxml file Hannes Röst
• 2014/01/22 Re: [spctools-discuss] Re: How to extract the intensities for peaks with a specific m/z from the mzxml file Jason Winget
• 2014/01/22 Re: [spctools-discuss] Re: How to extract the intensities for peaks with a specific m/z from the mzxml file Hannes Röst
• 2014/01/22 [spctools-discuss] Re: How to extract the intensities for peaks with a specific m/z from the mzxml file Jason Winget
• 2014/01/22 [spctools-discuss] extract intensity values for peaks with defined m/z values from mzxml files Liang QIAO
• 2014/01/22 [spctools-discuss] How to extract the intensities for peaks with a specific m/z from the mzxml file Liang QIAO
• 2014/01/21 Re: [spctools-discuss] Decoy issue Jimmy Eng
• 2014/01/21 Re: [spctools-discuss] Decoy issue srihari sharma
• 2014/01/21 Re: [spctools-discuss] Decoy issue Jimmy Eng
• 2014/01/20 [spctools-discuss] Decoy issue srihari sharma
• 2014/01/16 [spctools-discuss] Next TPP course March 31 - April 4 Eric Deutsch
• 2014/01/12 Re: [spctools-discuss] ERROR: two instrument models: LTQ Orbitrap XL and LTQ Orbitrap David Shteynberg
• 2014/01/12 [spctools-discuss] Re: ERROR: two instrument models: LTQ Orbitrap XL and LTQ Orbitrap Adrian Guthals
• 2014/01/11 [spctools-discuss] ERROR: two instrument models: LTQ Orbitrap XL and LTQ Orbitrap Adrian Guthals
• 2014/01/09 [spctools-discuss] Developing scoring scheme compatible with PeptideProphet Jorey Dong
• 2013/12/30 Re: [spctools-discuss] Re: Failure with make zliao001
• 2013/12/19 Re: [spctools-discuss] NSP model in iProphet/ProteinProphet; model vs decoy based FDR in ProteinProphet Rene B
• 2013/12/18 [spctools-discuss] Re: support for Morpheus search algorithm in TPP David
• 2013/12/18 Re: [spctools-discuss] NSP model in iProphet/ProteinProphet; model vs decoy based FDR in ProteinProphet David Shteynberg
• 2013/12/18 [spctools-discuss] NSP model in iProphet/ProteinProphet; model vs decoy based FDR in ProteinProphet Rene B
• 2013/12/14 Re: [spctools-discuss] How to calculate offset for each scan in mzXML file Hannes Röst
• 2013/12/14 [spctools-discuss] Re: Automatic generation of spectra images Jesse
• 2013/12/14 Re: [spctools-discuss] How to calculate offset for each scan in mzXML file Jimmy Eng
• 2013/12/13 Re: [spctools-discuss] How to calculate offset for each scan in mzXML file Jorey Dong
• 2013/12/13 Re: [spctools-discuss] How to calculate offset for each scan in mzXML file Jorey Dong
• 2013/12/13 Re: [spctools-discuss] How to calculate offset for each scan in mzXML file Jimmy Eng
• 2013/12/13 [spctools-discuss] How to calculate offset for each scan in mzXML file Jorey Dong
• 2013/12/12 Re: [spctools-discuss] Questions regarding PTM Prophet parameters David Shteynberg
• 2013/12/11 Re: [spctools-discuss] Problems with xpress peptide results Jimmy Eng
• 2013/12/11 [spctools-discuss] Questions regarding PTM Prophet parameters Vidya Venkatraman
• 2013/12/09 [spctools-discuss] Problems with xpress peptide results Jeffrey Milloy
• 2013/12/08 Re: [spctools-discuss] OMSSA help Robert Winkler
• 2013/12/05 Re: [spctools-discuss] OMSSA help 钟传奇
• 2013/12/05 Re: [spctools-discuss] OMSSA help Naiping Dong
• 2013/12/05 [spctools-discuss] OMSSA help srihari sharma
• 2013/12/02 Re: [spctools-discuss] Re: A complicated but seems easy problem of inferring FDR in protein level Michael Hoopmann
• 2013/11/30 [spctools-discuss] support for Morpheus search algorithm in TPP Craig Wenger
• 2013/11/28 [spctools-discuss] Re: A complicated but seems easy problem of inferring FDR in protein level zion
• 2013/11/27 [spctools-discuss] Re: A complicated but seems easy problem of inferring FDR in protein level Brendan MacLean
• 2013/11/27 Re: [spctools-discuss] A complicated but seems easy problem of inferring FDR in protein level Michael Hoopmann
• 2013/11/26 Re: [spctools-discuss] combining two or more pep.xml for abacus Jimmy Eng
• 2013/11/26 [spctools-discuss] combining two or more pep.xml for abacus srihari sharma
• 2013/11/26 [spctools-discuss] A complicated but seems easy problem of inferring FDR in protein level zion
• 2013/11/25 [spctools-discuss] Next TPP course March 31 - April 4: registration is open! Eric Deutsch
• 2013/11/19 [spctools-discuss] proteome discoverer and peptide prophet comparison Delphine
• 2013/11/19 Re: [spctools-discuss] Digest for spctools-discuss@googlegroups.com - 14 Messages in 4 Topics delphine wood
• 2013/11/18 Re: [spctools-discuss] empty interact.pep.xml and interact.prot.xml Luis Mendoza
• 2013/11/17 [spctools-discuss] empty interact.pep.xml and interact.prot.xml user1
• 2013/11/15 Re: [spctools-discuss] TPP on cluster - Petunia running remotely? Joshua Dunham
• 2013/11/15 [spctools-discuss] Re: xargs:cannot fork? user1
• 2013/11/15 Re: [spctools-discuss] Re: xargs:cannot fork? Joseph Slagel
• 2013/11/15 [spctools-discuss] Re: xargs:cannot fork? user1
• 2013/11/13 Re: [spctools-discuss] TPP on cluster - Petunia running remotely? Joseph Slagel
• 2013/11/13 [spctools-discuss] Re: error with installing TPP4.5.2 fangqiaojun

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