Thanks Matt! That did the trick. -Chris
On Nov 23, 9:08 pm, Matt Chambers <matt.chamber...@gmail.com> wrote: > For an orbi/ltq run, myrimatch.cfg might look like: > PrecursorMzTolerance = 10 > PrecursorMzToleranceUnits = ppm > FragmentMzTolerance = 0.5 > FragmentMzToleranceUnits = daltons > ProteinDatabase = c:\foo\bar.fasta > NumMinTerminiCleavages = 1 > CleavageRules = trypsin/p > DynamicMods = M * 15.9949 C * 57.0215 > UseChargeStateFromMS = true > UseAvgMassOfSequences = false > > Also, you might try BumberDash which is our fairly new GUI wrapper for the > Bumbershoot tools. It includes a configuration > editor.http://fenchurch.mc.vanderbilt.edu:37280/repository/download/bt50/744... > > Hope this helps, > -Matt > > On 11/23/2010 5:34 PM, Chris Rath wrote: > > > Hi: > > > I have heard good things about Myrimatch and would like to compare it > > with results from my usual Tandem, Mascot, and OMSSA processing in the > > TPP. > > > The only problem is that I while I can run the program from the > > command line, I am having trouble searching with anything but the > > default options. > > > The documentation (http://fenchurch.mc.vanderbilt.edu/bumbershoot/ > > myrimatch/index.html) suggests using a .cfg file "myrimatch.cfg" > > however I cannot get this to work. Does anyone have a sample .cfg > > file that I can use as a template? > > > Thanks, > > > -Chris -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to spctools-disc...@googlegroups.com. To unsubscribe from this group, send email to spctools-discuss+unsubscr...@googlegroups.com. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
