spctools-discuss
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Re: [spctools-discuss] COMET issues
Michael Hoopmann
Re: [spctools-discuss] COMET issues
Sebastian Wiese
[spctools-discuss] TPP4.8.0 - Display all peptides on protein primary sequence in pepxml viewer
Adam Oberstein
[spctools-discuss] iPRG2015 - Deadline extended!
Henry Lam
[spctools-discuss] TPP 4.8 error with xinteract - runtime?
Sarah Parker
Re: [spctools-discuss] TPP 4.8 error with xinteract - runtime?
David Shteynberg
Re: [spctools-discuss] TPP 4.8 error with xinteract - runtime?
Sarah Parker
Re: [spctools-discuss] TPP 4.8 error with xinteract - runtime?
David Shteynberg
Re: [spctools-discuss] TPP 4.8 error with xinteract - runtime?
Sarah Parker
[spctools-discuss] TPP 4.8.0 compile fatal error
Brian Hampton
Re: [spctools-discuss] TPP 4.8.0 compile fatal error
Joseph Slagel
Re: [spctools-discuss] TPP 4.8.0 compile fatal error
Brian Hampton
Re: [spctools-discuss] TPP 4.8.0 compile fatal error
Joseph Slagel
[spctools-discuss] How-To get Petunia TPP working with a network share as data directory
Ulrich Omasits
Re: [spctools-discuss] How-To get Petunia TPP working with a network share as data directory
Rebekah Dawson
[spctools-discuss] Re: How-To get Petunia TPP working with a network share as data directory
zeyu sun
[spctools-discuss] Re: How-To get Petunia TPP working with a network share as data directory
zeyu sun
[spctools-discuss] Re: How-To get Petunia TPP working with a network share as data directory
Ulrich Omasits
[spctools-discuss] Re: How-To get Petunia TPP working with a network share as data directory
Ruby
Re: [spctools-discuss] Call for Participants: Proteome Informatics Research Group Community Study on Label-free Quantitative Proteomics
Silvia Rocchiccioli
[spctools-discuss] Command FAILED RETURN CODE:256
lei
Re: [spctools-discuss] Command FAILED RETURN CODE:256
Joseph Slagel
Re: [spctools-discuss] Command FAILED RETURN CODE:256
lei
Re: [spctools-discuss] RTCalc (ANN)
Chih-Chiang Tsou
Re: [spctools-discuss] RTCalc (ANN)
David Shteynberg
Re: [spctools-discuss] RTCalc (ANN)
Chih-Chiang Tsou
Re: [spctools-discuss] RTCalc (ANN)
David Shteynberg
Re: [spctools-discuss] RTCalc (ANN)
magnus.palmb...@gmail.com
Re: [spctools-discuss] RTCalc (ANN)
Chih-Chiang Tsou
[spctools-discuss] xcorr (sequest) and charge filtering for pep.xml files
andreas . otto
Re: [spctools-discuss] xcorr (sequest) and charge filtering for pep.xml files
David Shteynberg
Re: [spctools-discuss] xcorr (sequest) and charge filtering for pep.xml files
andreas . otto
[spctools-discuss] TPP 4.8 (Windows) tandem output path not correct?
Brian Hampton
Re: [spctools-discuss] TPP 4.8 (Windows) tandem output path not correct?
David Shteynberg
Re: [spctools-discuss] TPP 4.8 (Windows) tandem output path not correct?
Brian Hampton
[spctools-discuss] TPP 4.8 msconvert error
Brian Hampton
Re: [spctools-discuss] TPP 4.8 msconvert error
Luis Mendoza
Re: [spctools-discuss] TPP 4.8 msconvert error
Steffen Neumann
[spctools-discuss] Problem in TPP 4.7.1 error output from Peptide Prophet
Brian Hampton
Re: [spctools-discuss] Problem in TPP 4.7.1 error output from Peptide Prophet
David Shteynberg
Re: [spctools-discuss] Problem in TPP 4.7.1 error output from Peptide Prophet
Brian Hampton
[spctools-discuss] Xtandem Fasta_pro executable fails handling big Fasta entries
Canan Has
Re: [spctools-discuss] question on PeptideProphet model-quality checks & problem with forced models
David Shteynberg
[spctools-discuss] PTMProphet error
钟传奇
[spctools-discuss] TPP 4.8 How to view and export Xpress results with new ProtXML viewer
Alejandro
Re: [spctools-discuss] TPP 4.8 How to view and export Xpress results with new ProtXML viewer
Luis Mendoza
[spctools-discuss] Xcorr filtering of pep.xml
bert heinz
[spctools-discuss] TPP 4.8.0 Release is now available
Joseph Slagel
[spctools-discuss] Re: TPP 4.8.0 Release is now available
Alejandro
[spctools-discuss] Re: TPP 4.8.0 Release is now available
Alfonso Olaya Abril
[spctools-discuss] Re: TPP 4.8.0 Release is now available
Vladimir Gorshkov
[spctools-discuss] Re: TPP 4.8.0 Release is now available
MD
Re: [spctools-discuss] Re: TPP 4.8.0 Release is now available
Joseph Slagel
Re: [spctools-discuss] Re: TPP 4.8.0 Release is now available
Mohammad T Islam
Re: [spctools-discuss] Re: TPP 4.8.0 Release is now available
Joseph Slagel
Re: [spctools-discuss] Re: TPP 4.8.0 Release is now available
Mohammad T Islam
Re: [spctools-discuss] Re: TPP 4.8.0 Release is now available
Joseph Slagel
[spctools-discuss] TPP 4.7.1 ASAPratio taking hours Qexactive data (Win7 64 bits 8GB RAM)
Alejandro
[spctools-discuss] Re: TPP 4.7.1 ASAPratio taking hours Qexactive data (Win7 64 bits 8GB RAM)
Alejandro
Re: [spctools-discuss] Re: TPP 4.7.1 ASAPratio taking hours Qexactive data (Win7 64 bits 8GB RAM)
Brian Hampton
Re: [spctools-discuss] Re: TPP 4.7.1 ASAPratio taking hours Qexactive data (Win7 64 bits 8GB RAM)
Alejandro
Re: [spctools-discuss] Re: TPP 4.7.1 ASAPratio taking hours Qexactive data (Win7 64 bits 8GB RAM)
Hannes Röst
Re: [spctools-discuss] Re: TPP 4.7.1 ASAPratio taking hours Qexactive data (Win7 64 bits 8GB RAM)
David Shteynberg
[spctools-discuss] spectraST error
Delphine
Re: [spctools-discuss] spectraST error
David Shteynberg
Re: [spctools-discuss] spectraST error
delphine wood
Re: [spctools-discuss] spectraST error
Rene B
Re: [spctools-discuss] spectraST error
delphine wood
Re: [spctools-discuss] spectraST error
David Shteynberg
RE: [spctools-discuss] spectraST error
Eric Deutsch
Re: [spctools-discuss] spectraST error
delphine wood
RE: [spctools-discuss] spectraST error
Eric Deutsch
Re: [spctools-discuss] spectraST error
yuderuii
[spctools-discuss] Re: MaRiMba fail with 18 protein mix file
Victor Manuel Solis Mezarino
[spctools-discuss] Re: Problem with MARIMBA, see ERROR messages below.
Victor Manuel Solis Mezarino
[spctools-discuss] Unable to explain peptide weights in Protein Prophet
Ira Cooke
Re: [spctools-discuss] Unable to explain peptide weights in Protein Prophet
Luis Mendoza
[spctools-discuss] Error writing run
Javier Sotillo Gallego
Re: [spctools-discuss] Error writing run
Joseph Slagel
Re: [spctools-discuss] Error writing run
Javier Sotillo Gallego
[spctools-discuss] MAYU on peptideprophet and iprophet results
Huoming Zhang
Re: [spctools-discuss] MAYU on peptideprophet and iprophet results
David Shteynberg
[spctools-discuss] translateDNA2AA-FASTA
veronica . t . mutchler
Re: [spctools-discuss] translateDNA2AA-FASTA
Jimmy Eng
Re: [spctools-discuss] translateDNA2AA-FASTA
Veronica Mutchler
Re: [spctools-discuss] translateDNA2AA-FASTA
Veronica Mutchler
Re: [spctools-discuss] translateDNA2AA-FASTA
Jimmy Eng
Re: [spctools-discuss] translateDNA2AA-FASTA
Veronica Mutchler
Re: [spctools-discuss] translateDNA2AA-FASTA
Luis Mendoza
[spctools-discuss] ASAPRatio on unlabeled samples?
veronica . t . mutchler
Re: [spctools-discuss] Re: parsing error for pepXML from mascot result
Etienne Caron
Re: [spctools-discuss] Re: parsing error for pepXML from mascot result
David Shteynberg
Re: [spctools-discuss] Re: parsing error for pepXML from mascot result
Etienne Caron
[spctools-discuss] .dat files/waters .raw data files
Maria Jose Martinez
[spctools-discuss] Can't kill command: no job id passed!
정진선
[spctools-discuss] Re: Export result data for blast?
zeyu sun
[spctools-discuss] does the search using multiple threads for X!tandem affect k-score?
Huoming Zhang
Re: [spctools-discuss] does the search using multiple threads for X!tandem affect k-score?
David Shteynberg
Re: [spctools-discuss] does the search using multiple threads for X!tandem affect k-score?
Huoming Zhang
[spctools-discuss] Many potential modifications and X!Tandem : long search duration.
DELOLME Frederic
Re: [spctools-discuss] Many potential modifications and X!Tandem : long search duration.
David Shteynberg
Re: [spctools-discuss] Many potential modifications and X!Tandem : long search duration.
Frédéric DELOLME
[spctools-discuss] Encoded charge does not match the assumed_charge
李桂林
[spctools-discuss] Re: Encoded charge does not match the assumed_charge
李桂林
Re: [spctools-discuss] Re: Encoded charge does not match the assumed_charge
David Shteynberg
Re: [spctools-discuss] Re: Encoded charge does not match the assumed_charge
李桂林
Re: [spctools-discuss] Re: Encoded charge does not match the assumed_charge
李桂林
Re: [spctools-discuss] Re: Encoded charge does not match the assumed_charge
David Shteynberg
Re: [spctools-discuss] Re: Encoded charge does not match the assumed_charge
李桂林
Re: [spctools-discuss] Re: Encoded charge does not match the assumed_charge
David Shteynberg
Re: [spctools-discuss] Re: Encoded charge does not match the assumed_charge
李桂林
Re: [spctools-discuss] Re: Encoded charge does not match the assumed_charge
李桂林
[spctools-discuss] Mascot2XML - no enzyme
Vishal Swaroop
Re: [spctools-discuss] Mascot2XML - no enzyme
Jimmy Eng
[spctools-discuss] Tools for ms1 search using mass, retention time and isotopic pattern
David Zhao
[spctools-discuss] problem of PeptideProphetParser for large dataset
zeyu sun
[spctools-discuss] OMSSA and iprophet
zeyu sun
[spctools-discuss] X!tandem error
zeyu sun
Re: [spctools-discuss] X!tandem error
Jimmy Eng
Re: [spctools-discuss] X!tandem error
zeyu sun
RE: [spctools-discuss] X!tandem error
Eric Deutsch
Re: [spctools-discuss] X!tandem error
zeyu sun
Re: [spctools-discuss] X!tandem error
Brian Hampton
Re: [spctools-discuss] X!tandem error
zeyu sun
[spctools-discuss] How to process MS3 Data from Orbitrap Fusion?
Will Fondrie
Re: [spctools-discuss] How to process MS3 Data from Orbitrap Fusion?
Jimmy Eng
Re: [spctools-discuss] How to process MS3 Data from Orbitrap Fusion?
Will Fondrie
Re: [spctools-discuss] How to process MS3 Data from Orbitrap Fusion?
Will Fondrie
[spctools-discuss] FWD: Deprecated CGI endform in tpp_gui.pl caused centos install to fail
Joseph Slagel
Re: [spctools-discuss] FWD: Deprecated CGI endform in tpp_gui.pl caused centos install to fail
Luis Mendoza
[spctools-discuss] why peptideprophet model fails for 2+ peptides?
Ulrich Omasits
Re: [spctools-discuss] iTRAQ data through xtandem! using TPP
Alberto Labarga
Re: [spctools-discuss] iTRAQ data through xtandem! using TPP
Frédéric DELOLME
[spctools-discuss] peptide probability filtering
Kirill Borziak
[spctools-discuss] Problems converting wiff files to mzML
Jana Horáková
Re: [spctools-discuss] Problems converting wiff files to mzML
Robert Winkler
Re: [spctools-discuss] Problems converting wiff files to mzML
Jana Horáková
Re: [spctools-discuss] Problems converting wiff files to mzML
Xabier Martinez De Morentin
[spctools-discuss] Wiff file conversion to mzML
Jana Horáková
Re: [spctools-discuss] Wiff file conversion to mzML
钟传奇
[spctools-discuss] Re: Wiff file conversion to mzML
Xabier Martinez De Morentin
[spctools-discuss] Libra condition.xml syntax
Konstantinos Vougas
Re: [spctools-discuss] Libra condition.xml syntax
Luis Mendoza
[spctools-discuss] Re: Libra condition.xml syntax
Konstantinos Vougas
[spctools-discuss] Semi-empirical spectra generation: single aa substitution
Jelena Chuklina
[spctools-discuss] Sequest search question
David Zhao
[spctools-discuss] Should I use discriminant score or expect value for PTM modeling for comet search results
David Zhao
[spctools-discuss] Re: Multiple lysine modifications and quantification
Jesse
[spctools-discuss] Export to .xls from command line
Adam Oberstein
Re: [spctools-discuss] Export to .xls from command line
钟传奇
Re: [spctools-discuss] Export to .xls from command line
Luis Mendoza
Re: [spctools-discuss] Export to .xls from command line
钟传奇
Re: [spctools-discuss] Export to .xls from command line
钟传奇
[spctools-discuss] Re: Export to .xls from command line
Jason Winget
[spctools-discuss] Re: Export to .xls from command line
Adam Oberstein
[spctools-discuss] Re: Export to .xls from command line
Adam Oberstein
[spctools-discuss] Re: Export to .xls from command line
Adam Oberstein
Re: [spctools-discuss] Export to .xls from command line
钟传奇
[spctools-discuss] TPP 4.7 error when performing data search (following tutorial)
Jelena Chuklina
[spctools-discuss] How to fix message NOCMDFILE
Marianne Brannon
[spctools-discuss] Re: How to fix message NOCMDFILE
Marianne Brannon
[spctools-discuss] How to set iprobility value cutoff input for proteinprophet?
钟传奇
[spctools-discuss] X!Tandem searches take too long
Marianne Brannon
Re: [spctools-discuss] X!Tandem searches take too long
Joseph Slagel
Re: [spctools-discuss] X!Tandem searches take too long
Marianne Brannon
Re: [spctools-discuss] X!Tandem searches take too long
Joseph Slagel
[spctools-discuss] Attempted to access forbidden directory
SURUCHI AGGARWAL
[spctools-discuss] Possible Bug in TPP 4.7.1
dsimpson3
[spctools-discuss] Re: Possible Bug in TPP 4.7.1
dsimpson3
[spctools-discuss] Re: Possible Bug in TPP 4.7.1
2kl...@gmail.com
[spctools-discuss] ASAPRatio Problem
Shadab Ahmad
[spctools-discuss] Re: ASAPRatio Problem
Xabier Martinez De Morentin
Re: [spctools-discuss] Re: ASAPRatio Problem
David Shteynberg
[spctools-discuss] Base peak intensity values not reported in pepxml files
Brian Hampton
[spctools-discuss] Re: Base peak intensity values not reported in pepxml files
Jason Winget
Re: [spctools-discuss] Re: Base peak intensity values not reported in pepxml files
Brian Hampton
Re: [spctools-discuss] Re: Base peak intensity values not reported in pepxml files
Jimmy Eng
Re: [spctools-discuss] Re: Base peak intensity values not reported in pepxml files
Brian Hampton
[spctools-discuss] Tandem2XML problem (RETURN CODE:768)
zeyu sun
Re: [spctools-discuss] Tandem2XML problem (RETURN CODE:768)
Luis Mendoza
[spctools-discuss] ProteinProphet crashes by an unknown reason
Lee, Joungmin
[spctools-discuss] ProteinProphet crashes
Lee, Joungmin
[spctools-discuss] ASAPRatio problem update - is fixed in TPP 4.7.1 !
Brian Hampton
[spctools-discuss] ASAPRatio, not using massdiff properly for chemical isotopic labeling?
Brian Hampton
Re: [spctools-discuss] ASAPRatio, not using massdiff properly for chemical isotopic labeling?
David Shteynberg
[spctools-discuss] HOW to get the "Specify Tandem Parameters File"?~~~help~~~
jason cao
Re: [spctools-discuss] HOW to get the "Specify Tandem Parameters File"?~~~help~~~
钟传奇
Re: [spctools-discuss] HOW to get the "Specify Tandem Parameters File"?~~~help~~~
jason cao
[spctools-discuss] what is "Specify Tandem Parameters File"!!!!
jason cao
[spctools-discuss] how to creat a " Specify Tandem Parameters File "!!!!!!!! hurry~~~help
jason cao
[spctools-discuss] [PeptideProphet] limitation of input file size?
User
Re: [spctools-discuss] [PeptideProphet] limitation of input file size?
Joseph Slagel
Re: [spctools-discuss] [PeptideProphet] limitation of input file size?
User
Re: [spctools-discuss] [PeptideProphet] limitation of input file size?
Joseph Slagel
Re: [spctools-discuss] [PeptideProphet] limitation of input file size?
User
[spctools-discuss] [PeptideProphet_Mascot] Runtime to terminate it in an unusual way.
User
[spctools-discuss] PTM prophet and DiMethylation
Oded
Re: [spctools-discuss] PTM prophet and DiMethylation
David Shteynberg
Re: [spctools-discuss] PTM prophet and DiMethylation
2kl...@gmail.com
Re: [spctools-discuss] PTM prophet and DiMethylation
Jesse Meyer
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