Hi Joe: I did convert mzml files. the problem is that the error showed up when I click the xpress ratio in prot.xml files. If I open the pep.shtml and click the xpress ratio, it is fine and showed me the chromatrography information for this peptide. This will not work if I open the prot.shtml and click the xpress ratio. The ASAP ratio is fine and I can open them and see the chromatography information.
Thanks Eileen ________________________________________ From: spctools-discuss@googlegroups.com [spctools-discuss@googlegroups.com] On Behalf Of Joseph Slagel [joseph.sla...@systemsbiology.org] Sent: Monday, October 17, 2011 4:22 PM To: spctools-discuss@googlegroups.com Subject: Re: [spctools-discuss] ASAP Ratiopeptideparse.exe-application error Eileen, Are you able to view the mzXML file directly using the pepxml viewer (by clicking on the link in petunia next to the filename). But come to think of it, did you convert it to mzXML or mzML files? -Joe On Mon, Oct 17, 2011 at 12:16 PM, Eileen Yue <y...@ohsu.edu<mailto:y...@ohsu.edu>> wrote: Dear Joseph: Thank you for your kind help! I followed your advice and copied the executable files on FTP site, which you put with my raw files together to C:\INTEPUB\TPP-BIN. I run the files 8, which gave me some error before, and finished successfully. Now there is another problem, I can not open xpress ratio to look the details but ASAP ratio is fine. When I click the XPRESS ratio for one peptide, there is one error information: Error - cannot open file "c:/Inetpub/wwwroot/ISB/data/ISL1026/ISL1026_ER_SCX_8_20110908_VE.mzXML". But for the same peptide, the asap ratio is fine. I can see the chromatography after I click the asap ratio. Do you have any advice for this? Thank you so much for your kind help Eileen ________________________________ From: spctools-discuss@googlegroups.com<mailto:spctools-discuss@googlegroups.com> [spctools-discuss@googlegroups.com<mailto:spctools-discuss@googlegroups.com>] On Behalf Of Joseph Slagel [joseph.sla...@systemsbiology.org<mailto:joseph.sla...@systemsbiology.org>] Sent: Friday, October 14, 2011 3:33 PM To: spctools-discuss@googlegroups.com<mailto:spctools-discuss@googlegroups.com> Subject: Re: [spctools-discuss] ASAP Ratiopeptideparse.exe-application error Eileen, It appears as some of the recent changes to the code base correct your problem (well at least on my system). So what I've done is copied the executables up to the ftp site. Could you make backup copies of your existing versions and replace them with the ones on the ftp site. The typical directory you would find these files in is C:\Inetpub\tpp-bin. -Joe On Fri, Sep 16, 2011 at 10:36 AM, Eileen Yue <y...@ohsu.edu<mailto:y...@ohsu.edu>> wrote: Dear all: When I run the TPP for the SILAC analysis, during the ASAP analysis time, there is always one error showed up: the instruction at "0x00406173" referenced memory at "0x7c35f048", the memory could not be "read" Does anyone know what is this for and how do I fix this problem? Thank you Eileen -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to spctools-discuss@googlegroups.com<mailto:spctools-discuss@googlegroups.com>. To unsubscribe from this group, send email to spctools-discuss+unsubscr...@googlegroups.com<mailto:spctools-discuss%2bunsubscr...@googlegroups.com>. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en. -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to spctools-discuss@googlegroups.com<mailto:spctools-discuss@googlegroups.com>. To unsubscribe from this group, send email to spctools-discuss+unsubscr...@googlegroups.com<mailto:spctools-discuss%2bunsubscr...@googlegroups.com>. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en. -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to spctools-discuss@googlegroups.com<mailto:spctools-discuss@googlegroups.com>. To unsubscribe from this group, send email to spctools-discuss+unsubscr...@googlegroups.com<mailto:spctools-discuss%2bunsubscr...@googlegroups.com>. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en. -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to spctools-discuss@googlegroups.com. To unsubscribe from this group, send email to spctools-discuss+unsubscr...@googlegroups.com. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en. -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to spctools-discuss@googlegroups.com. To unsubscribe from this group, send email to spctools-discuss+unsubscr...@googlegroups.com. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.
