thank you! actually I found another nice program the ProteinDigestionSimulator, http://omics.pnl.gov/software/ProteinDigestionSimulator.php. Both should work! sunsun
On Mon, Jul 30, 2012 at 10:46 PM, Amit Yadav <amit007thech...@gmail.com>wrote: > Hi > You can try digestdb.exe (comes with TPP) > Regards, > > *Amit Kumar Yadav * > Senior Research Fellow (SRF-CSIR) > IGIB, New Delhi (India) > > *MassWiz Web server* <http://masswiz.igib.res.in> > * <http://masswiz.igib.res.in>**MassWiz sourceforge > project*<https://sourceforge.net/projects/masswiz> > * > <https://sourceforge.net/projects/masswiz>**MassWiki*<https://sourceforge.net/apps/mediawiki/masswiz/index.php?title=MassWiki> > > > > On Mon, Jul 30, 2012 at 7:41 PM, zeyu sun <szy3...@gmail.com> wrote: > >> Hi, >> I'm wondering if any one here know how to predict all tryptic peptides >> from the whole E.coli proteome. There are tools like PeptideCutter for >> proteolytic prediction, but it can only cut one protein at each time. Any >> tools around that can take the whole FASTA database and output a list of >> tryptic peptides along with their masses? >> thank you very much! >> >> sunsun >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To post to this group, send email to spctools-discuss@googlegroups.com. >> To unsubscribe from this group, send email to >> spctools-discuss+unsubscr...@googlegroups.com. >> For more options, visit this group at >> http://groups.google.com/group/spctools-discuss?hl=en. >> > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To post to this group, send email to spctools-discuss@googlegroups.com. > To unsubscribe from this group, send email to > spctools-discuss+unsubscr...@googlegroups.com. > For more options, visit this group at > http://groups.google.com/group/spctools-discuss?hl=en. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to spctools-discuss@googlegroups.com. To unsubscribe from this group, send email to spctools-discuss+unsubscr...@googlegroups.com. For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en.