thank you! actually I found another nice program the
ProteinDigestionSimulator,
http://omics.pnl.gov/software/ProteinDigestionSimulator.php. Both should
work!
sunsun

On Mon, Jul 30, 2012 at 10:46 PM, Amit Yadav <amit007thech...@gmail.com>wrote:

> Hi
> You can try digestdb.exe (comes with TPP)
> Regards,
>
> *Amit Kumar Yadav *
> Senior Research Fellow (SRF-CSIR)
> IGIB, New Delhi (India)
>
> *MassWiz Web server* <http://masswiz.igib.res.in>
> * <http://masswiz.igib.res.in>**MassWiz sourceforge 
> project*<https://sourceforge.net/projects/masswiz>
> * 
> <https://sourceforge.net/projects/masswiz>**MassWiki*<https://sourceforge.net/apps/mediawiki/masswiz/index.php?title=MassWiki>
>
>
>
> On Mon, Jul 30, 2012 at 7:41 PM, zeyu sun <szy3...@gmail.com> wrote:
>
>> Hi,
>> I'm wondering if any one here know how to predict all tryptic peptides
>> from the whole E.coli proteome. There are tools like PeptideCutter for
>> proteolytic prediction, but it can only cut one protein at each time. Any
>> tools around that can take the whole FASTA database and output a list of
>> tryptic peptides along with their masses?
>> thank you very much!
>>
>> sunsun
>>
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