Messages by Date
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2018/08/20
[spctools-discuss] Re: Multi-threaded Protein Prophet
Adam Rabalski
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2018/08/16
[spctools-discuss] Multi-threaded Protein Prophet
Alan Smith
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2018/08/10
[spctools-discuss] Re: Great peptide-level quant but no protein-level quant for some proteins.
magnus.palmb...@gmail.com
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2018/08/09
Re: [spctools-discuss] TPP on linux command line
Chris Waizenegger
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2018/08/08
Re: [spctools-discuss] Analyze peptides- error
Darya Laptanovich
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2018/08/08
Re: [spctools-discuss] TPP on linux command line
Luis Mendoza
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2018/08/08
Re: [spctools-discuss] TPP on linux command line
Chris Waizenegger
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2018/08/06
[spctools-discuss] Change default options in peptide prophet/iprophet/protein prophet
Joey Davis
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2018/07/30
[spctools-discuss] Re: Convert mgf to mzML/mzXML
Adam Rabalski
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2018/07/30
[spctools-discuss] Re: Convert mgf to mzML/mzXML
Michael Hoopmann
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2018/07/30
[spctools-discuss] Re: Convert mgf to mzML/mzXML
Adam Rabalski
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2018/07/25
[spctools-discuss] Re: How to import TSV/txt from PeakView into SpectraST
Henry Lam
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2018/07/25
[spctools-discuss] Re: SpectraST deleting unmapped not working as expected -cD RefreshDatabase, -cu refreshDeleteUnmapped and -cd refreshDeleteMultimapped
Henry Lam
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2018/07/24
[spctools-discuss] Re: SpectraST: option to disable adding AAs randomly to shuffled sequence for generating DECOY spectra?
Henry Lam
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2018/07/24
[spctools-discuss] Re: SpectraST: Can't process NIST .msp file
Henry Lam
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2018/07/20
[spctools-discuss] Re: SpectraST: option to disable adding AAs randomly to shuffled sequence for generating DECOY spectra?
Chih-Chiang Tsou
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2018/07/20
[spctools-discuss] Re: SpectraST: option to disable adding AAs randomly to shuffled sequence for generating DECOY spectra?
Henry Lam
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2018/07/20
[spctools-discuss] Libra normalization problem
Rachel Nadeau
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2018/07/20
[spctools-discuss] Re: SpectraST: Can't process NIST .msp file
wout
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2018/07/20
[spctools-discuss] Tools for search results comparisons
alastair.skeffington via spctools-discuss
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2018/07/19
[spctools-discuss] SpectraST: option to disable adding AAs randomly to shuffled sequence for generating DECOY spectra?
Chih-Chiang Tsou
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2018/07/15
[spctools-discuss] Re: SpectraST: Can't process NIST .msp file
Henry Lam
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2018/07/15
[spctools-discuss] How to import TSV/txt from PeakView into SpectraST
ML
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2018/07/13
Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP
David Shteynberg
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2018/07/12
Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP
Vidya Venkatraman
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2018/07/12
[spctools-discuss] Spectrast unable to differentiate Trimethyl and Acetyl
Vidya Venkatraman
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2018/07/12
Re: [spctools-discuss] PTMprophet with open search, interpretation of PTM probabilities
David Shteynberg
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2018/07/10
Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP
David Shteynberg
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2018/07/10
Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP
Vidya Venkatraman
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2018/07/10
[spctools-discuss] SpectraST deleting unmapped not working as expected -cD RefreshDatabase, -cu refreshDeleteUnmapped and -cd refreshDeleteMultimapped
ML
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2018/07/10
Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP
David Shteynberg
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2018/07/09
Re: [spctools-discuss] PTMprophet with open search, interpretation of PTM probabilities
Piero Giansanti
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2018/07/08
[spctools-discuss] PepXML Viewer
Max
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2018/07/05
Re: [spctools-discuss] PTMProphetParser error help!
Emma Whittington
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2018/07/04
Re: [spctools-discuss] TPP on linux command line
alastair.skeffington via spctools-discuss
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2018/06/29
[spctools-discuss] Re: How to export unassigned mass spectra from Proteome Discoverer 2.0
ahegde
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2018/06/28
[spctools-discuss] mascot2xml doesn't recognise semi-lysArginase searches
Peter Bell
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2018/06/26
Re: [spctools-discuss] Question about Error Table (iProphet)
David Shteynberg
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2018/06/26
[spctools-discuss] Error table question
Rachel Nadeau
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2018/06/26
[spctools-discuss] Question about Error Table (iProphet)
Rachel Nadeau
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2018/06/25
Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP
Vidya Venkatraman
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2018/06/25
Re: [spctools-discuss] TPP on linux command line
David Shteynberg
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2018/06/25
Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP
David Shteynberg
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2018/06/25
Re: [spctools-discuss] PTMProphetParser error help!
David Shteynberg
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2018/06/25
[spctools-discuss] TPP on linux command line
alastair.skeffington via spctools-discuss
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2018/06/23
Re: [spctools-discuss] PTMProphetParser error help!
Emma Whittington
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2018/06/23
Re: [spctools-discuss] Re: support for Morpheus search algorithm in TPP
Vidya Venkatraman
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2018/06/22
Re: [spctools-discuss] PTMProphetParser error help!
David Shteynberg
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2018/06/22
[spctools-discuss] PTMProphetParser error help!
Emma Whittington
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2018/06/21
Re: [spctools-discuss] combining multiple iprophet results / Run NSP in iprophet if processing through protein prophet afterwards?
pbell . science
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2018/06/21
Re: [spctools-discuss] combining multiple iprophet results / Run NSP in iprophet if processing through protein prophet afterwards?
David Shteynberg
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2018/06/21
Re: [spctools-discuss] combining multiple iprophet results / Run NSP in iprophet if processing through protein prophet afterwards?
pbell . science
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2018/06/21
Re: [spctools-discuss] combining multiple iprophet results / Run NSP in iprophet if processing through protein prophet afterwards?
David Shteynberg
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2018/06/21
Re: [spctools-discuss] combining multiple iprophet results / Run NSP in iprophet if processing through protein prophet afterwards?
pbell . science
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2018/06/20
Re: [spctools-discuss] QualScore cannot be found anywhere:(
Luis Mendoza
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2018/06/20
Re: [spctools-discuss] combining multiple iprophet results / Run NSP in iprophet if processing through protein prophet afterwards?
David Shteynberg
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2018/06/19
[spctools-discuss] combining multiple iprophet results / Run NSP in iprophet if processing through protein prophet afterwards?
pbell . science
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2018/06/19
[spctools-discuss] QualScore cannot be found anywhere:(
flora . yufang . liu
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2018/06/18
Re: [spctools-discuss] MS3 quantification
chanyeric
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2018/06/18
Re: [spctools-discuss] MS3 quantification
Jimmy Eng
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2018/06/18
Re: [spctools-discuss] MS3 quantification
chanyeric
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2018/06/16
[spctools-discuss] How to export unassigned mass spectra from Proteome Discoverer 2.0
Jiancheng Ding
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2018/06/12
Re: [spctools-discuss] Re: No prot-MODELS
pbell . science
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2018/06/12
Re: [spctools-discuss] Re: No prot-MODELS
pbell . science
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2018/06/12
Re: [spctools-discuss] Valid combination of multiple samples, fractions and digestions with different enzymes, using prophets
pbell . science
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2018/06/12
Re: [spctools-discuss] iProphet for Leucine/isoleucine IDs
David Shteynberg
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2018/06/12
Re: [spctools-discuss] iProphet for Leucine/isoleucine IDs
Chih-Chiang Tsou
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2018/06/12
Re: [spctools-discuss] iProphet for Leucine/isoleucine IDs
David Shteynberg
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2018/06/12
[spctools-discuss] iProphet for Leucine/isoleucine IDs
Chih-Chiang Tsou
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2018/06/11
Re: [spctools-discuss] Valid combination of multiple samples, fractions and digestions with different enzymes, using prophets
pbell . science
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2018/06/11
Re: [spctools-discuss] tpp 5.1 compilation fails - operations.hpp:502: undefined reference to `boost::filesystem:....
David Shteynberg
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2018/06/11
Re: [spctools-discuss] tpp 5.1 compilation fails - operations.hpp:502: undefined reference to `boost::filesystem:....
David Shteynberg
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2018/06/11
Re: [spctools-discuss] tpp 5.1 compilation fails - operations.hpp:502: undefined reference to `boost::filesystem:....
Peter Sudmant
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2018/06/11
Re: [spctools-discuss] PTMprophet with open search, interpretation of PTM probabilities
David Shteynberg
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2018/06/11
Re: [spctools-discuss] tpp 5.1 compilation fails - operations.hpp:502: undefined reference to `boost::filesystem:....
David Shteynberg
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2018/06/11
Re: [spctools-discuss] tpp 5.1 compilation fails - operations.hpp:502: undefined reference to `boost::filesystem:....
Peter Sudmant
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2018/06/11
Re: [spctools-discuss] PTMprophet with open search, interpretation of PTM probabilities
Piero Giansanti
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2018/06/07
[spctools-discuss] Re: General Questions on Protein Quantification with StPeter and coupling to output of SearchGUI
Antonio Ortega
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2018/06/06
Re: [spctools-discuss] Valid combination of multiple samples, fractions and digestions with different enzymes, using prophets
pbell . science
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2018/06/06
RE: [spctools-discuss] Re: Stpeter comet vs Xtandem?
Eric Deutsch
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2018/06/06
RE: [spctools-discuss] Re: Stpeter comet vs Xtandem?
Eric Deutsch
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2018/06/06
Re: [spctools-discuss] Valid combination of multiple samples, fractions and digestions with different enzymes, using prophets
David Shteynberg
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2018/06/05
Re: [spctools-discuss] Peptide prophet - use of decoy database for X! searches?
David Shteynberg
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2018/06/05
Re: [spctools-discuss] Peptide prophet - use of decoy database for X! searches?
pbell . science
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2018/06/05
Re: [spctools-discuss] Peptide prophet - use of decoy database for X! searches?
David Shteynberg
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2018/06/05
[spctools-discuss] Valid combination of multiple samples, fractions and digestions with different enzymes, using prophets
pbell . science
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2018/06/05
[spctools-discuss] Peptide prophet - use of decoy database for X! searches?
Peter Bell
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2018/06/05
[spctools-discuss] Peptide prophet - use of decoy database for X! searches?
pbell . science
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2018/06/05
[spctools-discuss] Re: Stpeter comet vs Xtandem?
Panos Ioannidis
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2018/06/05
[spctools-discuss] Re: Stpeter comet vs Xtandem?
Jason Winget
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2018/06/05
[spctools-discuss] Re: Stpeter comet vs Xtandem?
Panos Ioannidis
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2018/06/04
[spctools-discuss] Re: General Questions on Protein Quantification with StPeter and coupling to output of SearchGUI
Michael Hoopmann
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2018/06/04
[spctools-discuss] Re: Convert mgf to mzML/mzXML
Panos Ioannidis
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2018/06/03
[spctools-discuss] Re: General Questions on Protein Quantification with StPeter and coupling to output of SearchGUI
Antonio Ortega
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2018/06/03
[spctools-discuss] Re: Convert mgf to mzML/mzXML
Antonio Ortega
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2018/06/02
[spctools-discuss] Re: General Questions on Protein Quantification with StPeter and coupling to output of SearchGUI
Michael Hoopmann
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2018/06/02
[spctools-discuss] Re: TPP 5.1.0 installation fails
Michael Hoopmann
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2018/06/02
[spctools-discuss] Re: TPP 5.1.0 installation fails
Panos Ioannidis
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2018/06/02
[spctools-discuss] Re: Convert mgf to mzML/mzXML
Panos Ioannidis
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2018/06/02
[spctools-discuss] Re: Convert mgf to mzML/mzXML
Michael Hoopmann
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2018/06/02
[spctools-discuss] Re: Convert mgf to mzML/mzXML
Panos Ioannidis
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2018/06/02
[spctools-discuss] Re: General Questions on Protein Quantification with StPeter and coupling to output of SearchGUI
Antonio Ortega
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2018/06/01
[spctools-discuss] Re: Convert mgf to mzML/mzXML
Michael Hoopmann
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2018/06/01
Re: [spctools-discuss] StPeter blank values
Michael Hoopmann
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2018/06/01
[spctools-discuss] Re: TPP 5.1.0 installation fails
Michael Hoopmann
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2018/06/01
[spctools-discuss] TPP @ ASMS -- booth #203 + Wednesday Workshop
Luis Mendoza
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2018/05/31
[spctools-discuss] Convert mgf to mzML/mzXML
Panos Ioannidis
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2018/05/31
[spctools-discuss] Re: Running database search from commandline
Panos Ioannidis
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2018/05/30
Re: [spctools-discuss] StPeter blank values
Alexander Pelletier
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2018/05/29
[spctools-discuss] TPP 5.1.0 installation fails
Panos Ioannidis
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2018/05/25
RE: [spctools-discuss] StPeter blank values
Michael Hoopmann
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2018/05/25
Re: [spctools-discuss] StPeter blank values
Alexander Pelletier
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2018/05/22
[spctools-discuss] Re: MsFragger vs Comet
David Zhao
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2018/05/22
[spctools-discuss] Re: General Questions on Protein Quantification with StPeter and coupling to output of SearchGUI
Michael Hoopmann
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2018/05/22
[spctools-discuss] Re: MsFragger vs Comet
Alexey Nesvizhskii
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2018/05/22
Re: [spctools-discuss] PTMprophet with open search, interpretation of PTM probabilities
Alexey Nesvizhskii
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2018/05/22
[spctools-discuss] TPP unable to complete Analysis using -dDECOY
annie . ha
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2018/05/22
Re: [spctools-discuss] PTMprophet with open search, interpretation of PTM probabilities
David Shteynberg
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2018/05/22
[spctools-discuss] MsFragger vs Comet
David Zhao
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2018/05/22
Re: [spctools-discuss] PTMprophet with open search, interpretation of PTM probabilities
Piero Giansanti
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2018/05/20
Re: [spctools-discuss] Re: Using PeptideProphet on SearchGUI output
David Shteynberg
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2018/05/20
Re: [spctools-discuss] Re: Using PeptideProphet on SearchGUI output
David Shteynberg
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2018/05/20
[spctools-discuss] Re: Using PeptideProphet on SearchGUI output
Antonio Ortega
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2018/05/19
[spctools-discuss] Using PeptideProphet on SearchGUI output
Antonio Ortega
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2018/05/19
[spctools-discuss] General Questions on Protein Quantification with StPeter and coupling to output of SearchGUI
Antonio Ortega
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2018/05/18
[spctools-discuss] analysing PTMprophet output
Emma Whittington
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2018/05/18
Re: [spctools-discuss] PTMprophet with open search, interpretation of PTM probabilities
David Shteynberg
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2018/05/18
Re: [spctools-discuss] PTMprophet with open search, interpretation of PTM probabilities
Piero Giansanti
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2018/05/18
Re: [spctools-discuss] PTMprophet with open search, interpretation of PTM probabilities
David Shteynberg
-
2018/05/18
[spctools-discuss] PTMprophet with open search, interpretation of PTM probabilities
Piero Giansanti
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2018/05/16
RE: [spctools-discuss] StPeter blank values
Michael Hoopmann
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2018/05/11
[spctools-discuss] Re: Export mzIndentML not recognizing file
Alexander Pelletier
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2018/05/07
Re: [spctools-discuss] Re: No prot-MODELS
Luis Mendoza
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2018/05/07
Re: [spctools-discuss] Re: No prot-MODELS
Heeyoun Hwang
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2018/05/07
Re: [spctools-discuss] Re: No prot-MODELS
Luis Mendoza
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2018/05/04
Re: [spctools-discuss] Duplicate peptides in consensus spectral library with different protein identifications
Sami Pietilä
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2018/05/04
[spctools-discuss] Re: No prot-MODELS
Heeyoun Hwang
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2018/05/04
[spctools-discuss] Re: Export mzIndentML not recognizing file
Heeyoun Hwang
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2018/05/03
RE: [spctools-discuss] Duplicate peptides in consensus spectral library with different protein identifications
Eric Deutsch
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2018/05/03
[spctools-discuss] Duplicate peptides in consensus spectral library with different protein identifications
Sami Pietilä
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2018/05/01
[spctools-discuss] No prot-MODELS
Heeyoun Hwang
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2018/04/17
[spctools-discuss] Export mzIndentML not recognizing file
Alexander Pelletier
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2018/04/13
[spctools-discuss] Mascot automatic decoy xinteract
Dr. Andreas Otto
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2018/04/04
Re: [spctools-discuss] XPRESS fails with big iProphet analyzed files TPP 5.1, Windows 7
Alejandro
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2018/03/28
Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML
David Shteynberg
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2018/03/28
Re: [spctools-discuss] XPRESS fails with big iProphet analyzed files TPP 5.1, Windows 7
David Shteynberg
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2018/03/28
[spctools-discuss] XPRESS fails with big iProphet analyzed files TPP 5.1, Windows 7
Alejandro
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2018/03/28
Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML
Thibault Robin
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2018/03/27
Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML
David Shteynberg
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2018/03/25
Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML
Thibault Robin
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2018/03/25
[spctools-discuss] Stpeter comet vs Xtandem?
Jason Winget
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2018/03/24
[spctools-discuss] Stpeter comet vs Xtandem?
Volkix
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2018/03/23
Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML
David Shteynberg
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2018/03/23
Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML
Thibault Robin
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2018/03/22
Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML
David Shteynberg
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2018/03/22
Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML
Thibault Robin
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2018/03/22
Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML
David Shteynberg
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2018/03/22
Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML
Thibault Robin
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2018/03/20
Re: [spctools-discuss] Index mzXML file error
Pavel
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2018/03/19
Re: [spctools-discuss] Index mzXML file error
Luis Mendoza
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2018/03/19
[spctools-discuss] TPP for large databases/ metaproteomics
Andreas Otto
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2018/03/19
[spctools-discuss] TPP for large databases/ metaproteomics
Dr. Andreas Otto
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2018/03/19
Re: [spctools-discuss] Exporting Proteome Discoverer 2.2 results to TPP
David Shteynberg
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2018/03/17
[spctools-discuss] Index mzXML file error
Pavel
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2018/03/17
[spctools-discuss] Re: Exporting Proteome Discoverer 2.2 results to TPP
Alejandro
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2018/03/14
[spctools-discuss] Exporting Proteome Discoverer 2.2 results to TPP
Joseph Gillen
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2018/03/12
[spctools-discuss] SpectraST OpenModTierSearch invalid pointer crash
wout
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2018/03/12
[spctools-discuss] SpectraST: Can't process NIST .msp file
wout
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2018/03/02
Re: [spctools-discuss] Interact parser multithreading
Volkix
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2018/03/01
Re: [spctools-discuss] Interact parser multithreading
David Shteynberg
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2018/03/01
Re: [spctools-discuss] Interact parser multithreading
Volkix
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2018/03/01
Re: [spctools-discuss] Interact parser multithreading
David Shteynberg
-
2018/03/01
[spctools-discuss] Interact parser multithreading
Volkix
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2018/03/01
Re: [spctools-discuss] TPP: Comet search output for decoys does not look correct (for .pep.xml and .pin files)
Francesca Barry
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2018/03/01
Re: [spctools-discuss] TPP: Comet search output for decoys does not look correct (for .pep.xml and .pin files)
Jimmy Eng
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2018/03/01
[spctools-discuss] TPP: Comet search output for decoys does not look correct (for .pep.xml and .pin files)
Francesca Barry
-
2018/02/21
Re: [spctools-discuss] Installing TPP 5.1.0 on RHEL 7 gives error
Joshua Dunham
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2018/02/20
RE: [spctools-discuss] TPP build issues on an Ubuntu 17 system
Eric Deutsch
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2018/02/20
Re: [spctools-discuss] Installing TPP 5.1.0 on RHEL 7 gives error
Monica HPC
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2018/02/18
Re: [spctools-discuss] TPP build issues on an Ubuntu 17 system
kumar
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2018/02/15
[spctools-discuss] Tandem error: Rerunning the iTRAQ fractions are giving repeted same error at the end of the completion in tandem
Syed Azmal Ali
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2018/02/14
RE: [spctools-discuss] Installing TPP 5.1.0 on RHEL 7 gives error
Michael Hoopmann
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2018/02/14
[spctools-discuss] Installing TPP 5.1.0 on RHEL 7 gives error
Monica HPC
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2018/02/13
RE: [spctools-discuss] TPP build issues on an Ubuntu 17 system
Eric Deutsch
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2018/02/12
[spctools-discuss] TPP build issues on an Ubuntu 17 system
kumar
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2018/02/12
Re: [spctools-discuss] Re: StPeter documentation
Michael Hoopmann
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2018/02/12
Re: [spctools-discuss] X!tandem stops after a few searches
Luis Mendoza
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2018/02/12
Re: [spctools-discuss] X!tandem stops after a few searches
Volkix
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2018/02/12
Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML
David Shteynberg
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2018/02/12
Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML
Thibault Robin
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2018/02/09
Re: [spctools-discuss] X!tandem stops after a few searches
Volkix
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2018/02/09
Re: [spctools-discuss] X!tandem stops after a few searches
Luis Mendoza
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2018/02/09
Re: [spctools-discuss] X!tandem stops after a few searches
Volkix
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2018/02/09
Re: [spctools-discuss] X!tandem stops after a few searches
Luis Mendoza
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2018/02/09
[spctools-discuss] X!tandem stops after a few searches
Volkix
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2018/02/08
[spctools-discuss] Re: Help! - The requested URL /tpp/cgi-bin/tpp_gui.pl was not found on this server.
Stanislav Luban
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2018/02/06
[spctools-discuss] LDAP Authentication
Thomas Mohr
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2018/02/05
Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML
David Shteynberg
-
2018/02/05
Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML
David Shteynberg
-
2018/02/05
Re: [spctools-discuss] Problems with PTMProphet and Tandem2XML
Thibault Robin