Yep - this works fine, thanks! Cheers,
Magnus On Wednesday, 17 April 2013 17:49:46 UTC+2, magnus....@gmail.com wrote: > > Hi David, > > Somehow I missed your reply (which was very quick). I will give it a try > now - thanks! > > > Magnus > > On Thursday, 28 March 2013 22:28:34 UTC+1, David Shteynberg wrote: >> >> Thanks for the files you've provided. I was able to find and fix one >> error in the code. TPP revision 6171 from trunk should contain this fix. >> Also I found an error in your commands. When you train a a Neural Net >> with RTCalc you have to use the ANN= option if you want to then apply the >> trained model to data. Here are my commands on your files using my new >> code: >> >> >> RTCalc TRAIN=list2_predictions_no_neg.txt ANN=list2_ann_DDS.coeff >> >> >> >> RTCalc PEPS=peptides.txt ANN=list2_ann_DDS.coeff >> >> I hope it works for you too! >> >> -David >> >> >> >> On Thu, Mar 28, 2013 at 10:58 AM, magnus....@gmail.com < >> magnus....@gmail.com> wrote: >> >>> OK - I sent the training set and the ANN model by e-mail. >>> >>> >>> On Thursday, 28 March 2013 18:49:41 UTC+1, David Shteynberg wrote: >>> >>>> Hi Magnus, >>>> >>>> Can you forward me the files you have and the commands you are using >>>> and I will debug? >>>> >>>> Thanks, >>>> -David >>>> >>>> On Thu, Mar 28, 2013 at 10:47 AM, magnus....@gmail.com < >>>> magnus....@gmail.com> wrote: >>>> >>>>> Dear All (especially David), >>>>> >>>>> I am trying to use the ANN retention time predictor. The training runs >>>>> OK, but when trying to use it I get this error: >>>>> >>>>> gsl: init_source.c:29: ERROR: vector length n must be positive integer >>>>> Default GSL error handler invoked. >>>>> >>>>> This application has requested the Runtime to terminate it in an >>>>> unusual way. >>>>> Please contact the application's support team for more information. >>>>> >>>>> >>>>> I used ca. 60,000 different peptides in the training set. How many >>>>> would be needed? What are the things to look out for? >>>>> >>>>> >>>>> Cheers, >>>>> >>>>> Magnus >>>>> >>>>> -- >>>>> You received this message because you are subscribed to the Google >>>>> Groups "spctools-discuss" group. >>>>> To unsubscribe from this group and stop receiving emails from it, send >>>>> an email to spctools-discu...@**googlegroups.com. >>>>> To post to this group, send email to spctools...@googlegroups.**com. >>>>> >>>>> Visit this group at http://groups.google.com/** >>>>> group/spctools-discuss?hl=en<http://groups.google.com/group/spctools-discuss?hl=en> >>>>> . >>>>> For more options, visit >>>>> https://groups.google.com/**groups/opt_out<https://groups.google.com/groups/opt_out> >>>>> . >>>>> >>>>> >>>>> >>>> >>>> -- >>> You received this message because you are subscribed to the Google >>> Groups "spctools-discuss" group. >>> To unsubscribe from this group and stop receiving emails from it, send >>> an email to spctools-discu...@googlegroups.com. >>> To post to this group, send email to spctools...@googlegroups.com. >>> Visit this group at >>> http://groups.google.com/group/spctools-discuss?hl=en. >>> For more options, visit https://groups.google.com/groups/opt_out. >>> >>> >>> >> >> -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To post to this group, send email to spctools-discuss@googlegroups.com. Visit this group at http://groups.google.com/group/spctools-discuss?hl=en. For more options, visit https://groups.google.com/groups/opt_out.
