spctools-discuss
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[spctools-discuss] Re: New at TTP. Problem with PSM validation
Carlos Humberto Paván
Re: [spctools-discuss] New at TTP. Problem with PSM validation
'David Shteynberg' via spctools-discuss
Re: [spctools-discuss] New at TTP. Problem with PSM validation
Carlos Humberto Paván
Re: [spctools-discuss] New at TTP. Problem with PSM validation
'David Shteynberg' via spctools-discuss
Re: [spctools-discuss] New at TTP. Problem with PSM validation
Carlos Humberto Paván
[spctools-discuss] QualScore - 0 dtas written
Miguel Cosenza
[spctools-discuss] Re: QualScore - 0 dtas written
Yun-En Chung
[spctools-discuss] SpectraST: Missing modifications in decoy free library import in ProteomeDiscoverer
RS
[spctools-discuss] Re: SpectraST: Missing modifications in decoy free library import in ProteomeDiscoverer
RS
RE: [spctools-discuss] Re: SpectraST: Missing modifications in decoy free library import in ProteomeDiscoverer
'Eric Deutsch' via spctools-discuss
Re: [spctools-discuss] Re: SpectraST: Missing modifications in decoy free library import in ProteomeDiscoverer
RS
RE: [spctools-discuss] Re: SpectraST: Missing modifications in decoy free library import in ProteomeDiscoverer
'Eric Deutsch' via spctools-discuss
Re: [spctools-discuss] Re: SpectraST: Missing modifications in decoy free library import in ProteomeDiscoverer
RS
RE: [spctools-discuss] Re: SpectraST: Missing modifications in decoy free library import in ProteomeDiscoverer
'Eric Deutsch' via spctools-discuss
Re: [spctools-discuss] Re: SpectraST: Missing modifications in decoy free library import in ProteomeDiscoverer
RS
Re: [spctools-discuss] Re: SpectraST: Missing modifications in decoy free library import in ProteomeDiscoverer
RS
[spctools-discuss] Specifying comet param file in batch file
Mark Athanason
[spctools-discuss] Re: Specifying comet param file in batch file
Jimmy Eng
RE: [spctools-discuss] Re: Specifying comet param file in batch file
Mark Athanason
[spctools-discuss] Re: Problem with SpectraST
paul.ungeth...@onlinehome.de
[spctools-discuss] Spectral library generation
Srinivas Srikanth
RE: [spctools-discuss] Spectral library generation
'Eric Deutsch' via spctools-discuss
Re: [spctools-discuss] Spectral library generation
Srinivas Srikanth
Re: [spctools-discuss] Spectral library generation
Aaron Robinson
[spctools-discuss] Re: C:/TPP/bin/runsearch' is not recognized as an internal or external command
Jimmy Eng
[spctools-discuss] Re: C:/TPP/bin/runsearch' is not recognized as an internal or external command
Phillip Wilmarth
Re: [spctools-discuss] Re: C:/TPP/bin/runsearch' is not recognized as an internal or external command
Javan Okendo
Re: [spctools-discuss] Re: C:/TPP/bin/runsearch' is not recognized as an internal or external command
Phillip Wilmarth
RE: [spctools-discuss] Re: C:/TPP/bin/runsearch' is not recognized as an internal or external command
'Eric Deutsch' via spctools-discuss
Re: [spctools-discuss] Re: C:/TPP/bin/runsearch' is not recognized as an internal or external command
Javan Okendo
[spctools-discuss] Percolator Error in TPP
Gabrielle H
Re: [spctools-discuss] Percolator Error in TPP
'Luis Mendoza' via spctools-discuss
Re: [spctools-discuss] Percolator Error in TPP
Gabrielle H
Re: [spctools-discuss] Percolator Error in TPP
'Luis Mendoza' via spctools-discuss
Re: [spctools-discuss] Percolator Error in TPP
Gabrielle H
[spctools-discuss] Re: Percolator Error in TPP
Jimmy Eng
[spctools-discuss] Re: Percolator Error in TPP
Gabrielle H
[spctools-discuss] Re: Percolator Error in TPP
Gabrielle H
[spctools-discuss] Trans-Proteomic Pipeline workshop at ASMS Tuesday 10am Central time
'Eric Deutsch' via spctools-discuss
[spctools-discuss] Spectrast: peptides with modifications are removed when converting NIST .msp formatted library to .splib.
Ray
[spctools-discuss] Re: Spectrast: peptides with modifications are removed when converting NIST .msp formatted library to .splib.
Wenguang
[spctools-discuss] Re: Spectrast: peptides with modifications are removed when converting NIST .msp formatted library to .splib.
Henry Lam
[spctools-discuss] Re: Spectrast: peptides with modifications are removed when converting NIST .msp formatted library to .splib.
Henry Lam
[spctools-discuss] TPP Error
Nimai Charan Mahanandia
Re: [spctools-discuss] TPP Error
Javan Okendo
[spctools-discuss] Re: TPP Error
felipe velasquez
Re: [spctools-discuss] Re: TPP Error
Robert Winkler
[spctools-discuss] Re: ASAPRatio for 15N?
Carlo de Oliveira Martins
[spctools-discuss] SpectrasT can't recognize Protein N-term acetylation modification
RayS
RE: [spctools-discuss] SpectrasT can't recognize Protein N-term acetylation modification
'Eric Deutsch' via spctools-discuss
[spctools-discuss] Error while running prophets with the comet results from searchGUI
JAVAN OKENDO
Re: [spctools-discuss] Error while running prophets with the comet results from searchGUI
Jimmy Eng
Re: [spctools-discuss] Error while running prophets with the comet results from searchGUI
Javan Okendo
Re: [spctools-discuss] Error while running prophets with the comet results from searchGUI
Jimmy Eng
Re: [spctools-discuss] Error while running prophets with the comet results from searchGUI
Kate Mostovenko
Re: [spctools-discuss] Error while running prophets with the comet results from searchGUI
Jimmy Eng
Re: [spctools-discuss] Error while running prophets with the comet results from searchGUI
Kate Mostovenko
Re: [spctools-discuss] Error while running prophets with the comet results from searchGUI
Jimmy Eng
Re: [spctools-discuss] Error while running prophets with the comet results from searchGUI
Jimmy Eng
Re: [spctools-discuss] Error while running prophets with the comet results from searchGUI
Kate Mostovenko
[spctools-discuss] Re: Error while running prophets with the comet results from searchGUI
JAVAN OKENDO
[spctools-discuss] Re: Error while running prophets with the comet results from searchGUI
JAVAN OKENDO
[spctools-discuss] Help in geneting Sequest and X!Tandem parameter files
JAVAN OKENDO
Re: [spctools-discuss] Help in geneting Sequest and X!Tandem parameter files
Jimmy Eng
Re: [spctools-discuss] Help in geneting Sequest and X!Tandem parameter files
Javan Okendo
Re: [spctools-discuss] Help in geneting Sequest and X!Tandem parameter files
Jimmy Eng
[spctools-discuss] PTMProphet MSFragger modification missing mass
Alex Zelter
Re: [spctools-discuss] PTMProphet MSFragger modification missing mass
'David Shteynberg' via spctools-discuss
Re: [spctools-discuss] PTMProphet MSFragger modification missing mass
Alex Zelter
Re: [spctools-discuss] PTMProphet MSFragger modification missing mass
'David Shteynberg' via spctools-discuss
[spctools-discuss] Kojak File not Found
Lindsey Ulmer
Re: [spctools-discuss] Kojak File not Found
'Luis Mendoza' via spctools-discuss
Re: [spctools-discuss] Kojak File not Found
Lindsey Ulmer
Re: [spctools-discuss] Kojak File not Found
Michael Hoopmann
Re: [spctools-discuss] Kojak File not Found
Michael Hoopmann
[spctools-discuss] ProteinProphet error
Daniel Geiszler
[spctools-discuss] Re: ProteinProphet error
Daniel Geiszler
[spctools-discuss] PTMProphet MSFragger modification mass discrepancy
Alex Zelter
Re: [spctools-discuss] PTMProphet MSFragger modification mass discrepancy
'David Shteynberg' via spctools-discuss
Re: [spctools-discuss] PTMProphet MSFragger modification mass discrepancy
Alex Zelter
Re: [spctools-discuss] PTMProphet MSFragger modification mass discrepancy
'David Shteynberg' via spctools-discuss
Re: [spctools-discuss] PTMProphet MSFragger modification mass discrepancy
Alex Zelter
[spctools-discuss] Problem installing TPP 5.2 on Windows
RUI XU
Re: [spctools-discuss] Problem installing TPP 5.2 on Windows
'David Shteynberg' via spctools-discuss
[spctools-discuss] Protein level FDR
Tanner Tessier
[spctools-discuss] TPP 5.2 in Ubuntu 18.04 not showing plots/images in PepProphet nor ProtProphet models
Alejandro
Re: [spctools-discuss] TPP 5.2 in Ubuntu 18.04 not showing plots/images in PepProphet nor ProtProphet models
'Luis Mendoza' via spctools-discuss
Re: [spctools-discuss] TPP 5.2 in Ubuntu 18.04 not showing plots/images in PepProphet nor ProtProphet models
Alejandro
[spctools-discuss] No decoys found by IProphet
'Alastair Skeffington' via spctools-discuss
[spctools-discuss] Re: No decoys found by IProphet
'Alastair Skeffington' via spctools-discuss
Re: [spctools-discuss] No decoys found by IProphet
'David Shteynberg' via spctools-discuss
Re: [spctools-discuss] No decoys found by IProphet
'Alastair Skeffington' via spctools-discuss
[spctools-discuss] Query related to Lorikeet viewer PTMprophet results in TPP
Mehar Un Nissa
[spctools-discuss] Re: Query related to Lorikeet viewer PTMprophet results in TPP
Mehar Un Nissa
Re: [spctools-discuss] Re: Query related to Lorikeet viewer PTMprophet results in TPP
'Luis Mendoza' via spctools-discuss
Re: [spctools-discuss] Re: Query related to Lorikeet viewer PTMprophet results in TPP
'David Shteynberg' via spctools-discuss
[spctools-discuss] irt issue
Srinivas Srikanth
RE: [spctools-discuss] irt issue
'Eric Deutsch' via spctools-discuss
Re: [spctools-discuss] irt issue
Srinivas Srikanth
[spctools-discuss] QualScore input format
Sebastien Leblanc
[spctools-discuss] Failed, error code 256 when I want to run LIBRA with TPP
Cindy Dieryckx
Re: [spctools-discuss] Failed, error code 256 when I want to run LIBRA with TPP
'David Shteynberg' via spctools-discuss
Re: [spctools-discuss] Failed, error code 256 when I want to run LIBRA with TPP
Cindy Dieryckx
Re: [spctools-discuss] Failed, error code 256 when I want to run LIBRA with TPP
'Luis Mendoza' via spctools-discuss
[spctools-discuss] mzIDentML
2kl...@gmail.com
RE: [spctools-discuss] mzIDentML
'Michael Hoopmann' via spctools-discuss
Re: [spctools-discuss] mzIDentML
2kl...@gmail.com
[spctools-discuss] all Kojak identified unlinked PSMs assigned a probability of 0 TPP/Kojak
Alex Zelter
Re: [spctools-discuss] all Kojak identified unlinked PSMs assigned a probability of 0 TPP/Kojak
'David Shteynberg' via spctools-discuss
Re: [spctools-discuss] all Kojak identified unlinked PSMs assigned a probability of 0 TPP/Kojak
Alex Zelter
[spctools-discuss] nan detected in NonParametricDistribution ... TPP Kojak
Alex Zelter
Re: [spctools-discuss] nan detected in NonParametricDistribution ... TPP Kojak
'David Shteynberg' via spctools-discuss
Re: [spctools-discuss] nan detected in NonParametricDistribution ... TPP Kojak
'David Shteynberg' via spctools-discuss
Re: [spctools-discuss] nan detected in NonParametricDistribution ... TPP Kojak
Alex Zelter
[spctools-discuss] Query related to filtering PTMprophet results in TPP
Mehar Un Nissa
Re: [spctools-discuss] Query related to filtering PTMprophet results in TPP
'David Shteynberg' via spctools-discuss
[spctools-discuss] Installation Error
Xavier Alexander M
[spctools-discuss] Query related to PTMprophet tool in TPP
Mehar Un Nissa
Re: [spctools-discuss] Query related to PTMprophet tool in TPP
'David Shteynberg' via spctools-discuss
[spctools-discuss] Spectra indexing for Waters DDA data
David Schmidt
[spctools-discuss] Interpretation of stats from pepXML viewer
'Alastair Skeffington' via spctools-discuss
RE: [spctools-discuss] Interpretation of stats from pepXML viewer
'Eric Deutsch' via spctools-discuss
Re: [spctools-discuss] Interpretation of stats from pepXML viewer
Jimmy Eng
RE: [spctools-discuss] Interpretation of stats from pepXML viewer
'Eric Deutsch' via spctools-discuss
Re: [spctools-discuss] Interpretation of stats from pepXML viewer
'Alastair Skeffington' via spctools-discuss
[spctools-discuss] Perl library errors: Centos 7
Shagun Gupta
RE: [spctools-discuss] Perl library errors: Centos 7
'Eric Deutsch' via spctools-discuss
Re: [spctools-discuss] Perl library errors: Centos 7
Shagun Gupta
RE: [spctools-discuss] Perl library errors: Centos 7
'Eric Deutsch' via spctools-discuss
Re: [spctools-discuss] Perl library errors: Centos 7
Shagun Gupta
RE: [spctools-discuss] Perl library errors: Centos 7
'Eric Deutsch' via spctools-discuss
Re: [spctools-discuss] Perl library errors: Centos 7
Shagun Gupta
RE: [spctools-discuss] Perl library errors: Centos 7
'Eric Deutsch' via spctools-discuss
[spctools-discuss] Question: mzML parsing issue SpectraST 5.0 (stand alone, Linux, MacOS)
Oliver Alka
[spctools-discuss] Re: Question: mzML parsing issue SpectraST 5.0 (stand alone, Linux, MacOS)
oliveralka
RE: [spctools-discuss] Re: Question: mzML parsing issue SpectraST 5.0 (stand alone, Linux, MacOS)
'Eric Deutsch' via spctools-discuss
[spctools-discuss] New to TPP: trouble understanding search parameters
Tanner Tessier
[spctools-discuss] Peptideprophet/iprophet/proteinprophet to combine MaxQuant output?
Jesse
[spctools-discuss] TPP installation failure in RHEL 7.4
arun kumar
Re: [spctools-discuss] TPP installation failure in RHEL 7.4
'David Shteynberg' via spctools-discuss
Re: [spctools-discuss] TPP installation failure in RHEL 7.4
Jai Ganesh
Re: [spctools-discuss] TPP installation failure in RHEL 7.4
'David Shteynberg' via spctools-discuss
RE: [spctools-discuss] Questions about spectral library generation different search engines and shared peptides
Eric Deutsch
Re: [spctools-discuss] Questions about spectral library generation different search engines and shared peptides
Nikita Boeren
[spctools-discuss] Combination of consensus libraries and import in MRM format via spectraST
Kristina Plate
RE: [spctools-discuss] Combination of consensus libraries and import in MRM format via spectraST
Eric Deutsch
Re: [spctools-discuss] Combination of consensus libraries and import in MRM format via spectraST
Kristina Plate
RE: [spctools-discuss] Combination of consensus libraries and import in MRM format via spectraST
Eric Deutsch
Re: [spctools-discuss] Combination of consensus libraries and import in MRM format via spectraST
Kristina Plate
RE: [spctools-discuss] Combination of consensus libraries and import in MRM format via spectraST
Eric Deutsch
Re: [spctools-discuss] Combination of consensus libraries and import in MRM format via spectraST
Kristina Plate
[spctools-discuss] Kojak + PeptideProphet FDR cutoff
Thomas Gossenreiter
Re: [spctools-discuss] Kojak + PeptideProphet FDR cutoff
'David Shteynberg' via spctools-discuss
Re: [spctools-discuss] Kojak + PeptideProphet FDR cutoff
Thomas Gossenreiter
Re: [spctools-discuss] Kojak + PeptideProphet FDR cutoff
Thomas Gossenreiter
Re: [spctools-discuss] Kojak + PeptideProphet FDR cutoff
'David Shteynberg' via spctools-discuss
Re: [spctools-discuss] Kojak + PeptideProphet FDR cutoff
Thomas Gossenreiter
[spctools-discuss] Best itraq quantification method using Fusion
Lifu Sheng
[spctools-discuss] Re: Best itraq quantification method using Fusion
Phillip Wilmarth
Re: [spctools-discuss] PeptideProphet - Kojak 1.5.5 vs. 1.6.1
David Shteynberg
Re: [spctools-discuss] PeptideProphet - Kojak 1.5.5 vs. 1.6.1
Thomas Gossenreiter
Re: [spctools-discuss] PeptideProphet - Kojak 1.5.5 vs. 1.6.1
'David Shteynberg' via spctools-discuss
Re: [spctools-discuss] PeptideProphet - Kojak 1.5.5 vs. 1.6.1
Thomas Gossenreiter
Re: [spctools-discuss] PeptideProphet - Kojak 1.5.5 vs. 1.6.1
'Michael Hoopmann' via spctools-discuss
Re: [spctools-discuss] PeptideProphet - Kojak 1.5.5 vs. 1.6.1
'David Shteynberg' via spctools-discuss
Re: [spctools-discuss] PeptideProphet - Kojak 1.5.5 vs. 1.6.1
Thomas Gossenreiter
[spctools-discuss] Double or sequential digest using Kojak in combination with PeptideProphet
nzsuzsanna
Re: [spctools-discuss] Double or sequential digest using Kojak in combination with PeptideProphet
Michael Hoopmann
Re: [spctools-discuss] Double or sequential digest using Kojak in combination with PeptideProphet
nzsuzsanna
[spctools-discuss] What happens during consensus building?
Kristina Plate
[spctools-discuss] Re: What happens during consensus building?
Kristina Plate
[spctools-discuss] How to quantify proteins using St Peter?
Debangana Chakravorty
[spctools-discuss] How to quantify proteins using St Peter?
Jason Winget
[spctools-discuss] problem installing TPP 5.2 on CentOS Linux release 7.3.1611
smdb
Re: [spctools-discuss] problem installing TPP 5.2 on CentOS Linux release 7.3.1611
David Shteynberg
Re: [spctools-discuss] problem installing TPP 5.2 on CentOS Linux release 7.3.1611
smdb
Re: [spctools-discuss] problem installing TPP 5.2 on CentOS Linux release 7.3.1611
smdb
Re: [spctools-discuss] problem installing TPP 5.2 on CentOS Linux release 7.3.1611
Shagun Gupta
[spctools-discuss] Re: problem installing TPP 5.2 on CentOS Linux release 7.3.1611
smdb
[spctools-discuss] xinteract exited with non-zero exit code: 139 [stuck on PeptideProphetParser command]
sangramjit basu
Re: [spctools-discuss] xinteract exited with non-zero exit code: 139 [stuck on PeptideProphetParser command]
David Shteynberg
[spctools-discuss] Comet2018+PTMProphet
Janel
Re: [spctools-discuss] Comet2018+PTMProphet
David Shteynberg
Re: [spctools-discuss] Comet2018+PTMProphet
Janel Beckley
Re: [spctools-discuss] Comet2018+PTMProphet
David Shteynberg
Re: [spctools-discuss] Comet2018+PTMProphet
Janel Beckley
[spctools-discuss] Problems installing TPP 5.2.0
sangramjit basu
[spctools-discuss] iRT calculation in existing library via import
Kristina Plate
[spctools-discuss] Problem installing TPP 5.2.0 in Fedora (Red Hat Enterprise Linux Server 7.6)
sangramjit basu
[spctools-discuss] Re: Problem installing TPP 5.2.0 in Fedora (Red Hat Enterprise Linux Server 7.6)
Jimmy Eng
[spctools-discuss] Re: Problem installing TPP 5.2.0 in Fedora (Red Hat Enterprise Linux Server 7.6)
sangramjit basu
[spctools-discuss] X!Tandem search failed in TPP v5.0.0
sudip ghosh
[spctools-discuss] X!Tandem search fails in TPP 5.0.0
sudip ghosh
Re: [spctools-discuss] X!Tandem search fails in TPP 5.0.0
David Shteynberg
Re: [spctools-discuss] X!Tandem search fails in TPP 5.0.0
sudip ghosh
Re: [spctools-discuss] TPP SpectraST Failed to open input file
David Shteynberg
[spctools-discuss] problem to install TPP 5.2.0
Virginie Imbault
RE: [spctools-discuss] problem to install TPP 5.2.0
Eric Deutsch
[spctools-discuss] Re: problem to install TPP 5.2.0
'Lars Brinkmann' via spctools-discuss
[spctools-discuss] Upcoming Trans-Proteomic Pipeline (TPP) courses
Eric Deutsch
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