I haven't upgraded to 4.8 yet. I noticed the following in the interact.pep.xml file and am wondering if it is just a formatting error when generating the output or if it has impacted the analysis by peptide prophet.
In the section below please notice the highlighed < and > (html entity for less than and greater than signs) which should be output as < or >. <mixturemodel_distribution name="no. missed enz. cleavages [nmc]"> <posmodel_distribution> <parameter name="nmc=0" value="0.333"/> *<parameter name="1<=nmc<=2" value="0.333"/>* *<parameter name="nmc>=3" value="0.333"/>* </posmodel_distribution> <negmodel_distribution> <parameter name="nmc=0" value="0.333"/> *<parameter name="1<=nmc<=2" value="0.333"/>* *<parameter name="nmc>=3" value="0.333"/>* </negmodel_distribution> </mixturemodel_distribution> Brian Hampton Protein Analysis Lab Center for Vascular and Inflammatory Diseases University of Maryland School of Medicine 655 West Baltimore Street BRB 7-018 Baltimore MD 21201 V: 410-706-8207 -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To post to this group, send email to spctools-discuss@googlegroups.com. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
