spctools-discuss
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Re: [spctools-discuss] Installer for TPP 6.3.0 does not recognize existence of MS VC++ 2015-2022
'David Shteynberg' via spctools-discuss
[spctools-discuss] TPP 6.3.0 Release is now available
'Luis Mendoza' via spctools-discuss
[spctools-discuss] protein validation
felipe velasquez
Re: [spctools-discuss] protein validation
'Luis Mendoza' via spctools-discuss
Re: [spctools-discuss] protein validation
felipe velasquez
Re: [spctools-discuss] protein validation
Jimmy Eng
Re: [spctools-discuss] protein validation
felipe velasquez
[spctools-discuss] Problem with PTMprophet
felipe velasquez
Re: [spctools-discuss] Problem with PTMprophet
'Luis Mendoza' via spctools-discuss
Re: [spctools-discuss] Problem with PTMprophet
felipe velasquez
Re: [spctools-discuss] Problem with PTMprophet
'Luis Mendoza' via spctools-discuss
Re: [spctools-discuss] Problem with PTMprophet
felipe velasquez
[spctools-discuss] SILAC quantification with targeted SIM
Will Comstock
Re: [spctools-discuss] SILAC quantification with targeted SIM
Jimmy Eng
Re: [spctools-discuss] SILAC quantification with targeted SIM
Will Comstock
Re: [spctools-discuss] SILAC quantification with targeted SIM
Will Comstock
Re: [spctools-discuss] SILAC quantification with targeted SIM
'Luis Mendoza' via spctools-discuss
[spctools-discuss] Re: Output sequence coverage info
Yasir Ahmed
[spctools-discuss] Re: Output sequence coverage info
Yasir Ahmed
Re: [spctools-discuss] Re: Output sequence coverage info
'Luis Mendoza' via spctools-discuss
Re: [spctools-discuss] Re: Output sequence coverage info
Yasir Ahmed
Re: [spctools-discuss] Re: Output sequence coverage info
'Luis Mendoza' via spctools-discuss
RE: [spctools-discuss] SSL problem
'Eric Deutsch' via spctools-discuss
[spctools-discuss] How does RT train work?
Aarthie Senathirajah
[spctools-discuss] MSFragger param
Priti Panchal
RE: [spctools-discuss] MSFragger param
'Eric Deutsch' via spctools-discuss
Re: [spctools-discuss] MSFragger param
Priti Panchal
Re: [spctools-discuss] MSFragger param
'Eric Deutsch' via spctools-discuss
[spctools-discuss] TPP 6.2.0 Release is now available
'Luis Mendoza' via spctools-discuss
[spctools-discuss] Analyzing Metaproteomic Data
Aarthie Senathirajah
Re: [spctools-discuss] Analyzing Metaproteomic Data
'Luis Mendoza' via spctools-discuss
[spctools-discuss] not getting significant hits while analyzing .raw file
reeju
[spctools-discuss] protein prophet failing on Eclipse searches
cabarnes...@gmail.com
Re: [spctools-discuss] protein prophet failing on Eclipse searches
'Luis Mendoza' via spctools-discuss
Re: [spctools-discuss] protein prophet failing on Eclipse searches
'David Shteynberg' via spctools-discuss
[spctools-discuss] Re: protein prophet failing on Eclipse searches
cabarnes...@gmail.com
[spctools-discuss] Libra results for individual peptides in ProteinProphet results page
Debojyoti Pal
[spctools-discuss] Error running xinteract on Kojak results using latest Docker image
Michael Riffle
Re: [spctools-discuss] Error running xinteract on Kojak results using latest Docker image
'David Shteynberg' via spctools-discuss
Re: [spctools-discuss] Error running xinteract on Kojak results using latest Docker image
Michael Riffle
[spctools-discuss] RAMP
Caroline Lennartsson
[spctools-discuss] Re: RAMP
mhoo...@systemsbiology.org
[spctools-discuss] Support for Skyline-built spectral libraries in DIALib-QC tool
Jakub Červenka
Re: [spctools-discuss] Support for Skyline-built spectral libraries in DIALib-QC tool
'Charu Midha' via spctools-discuss
Re: [spctools-discuss] Support for Skyline-built spectral libraries in DIALib-QC tool
Jakub Červenka
Re: [spctools-discuss] Support for Skyline-built spectral libraries in DIALib-QC tool
'Charu Midha' via spctools-discuss
[spctools-discuss] Xpress ratio in pepXML do not match those in XPressPeptideUpdateParser.cgi
2kl...@gmail.com
Re: [spctools-discuss] Xpress ratio in pepXML do not match those in XPressPeptideUpdateParser.cgi
'Luis Mendoza' via spctools-discuss
Re: [spctools-discuss] Xpress ratio in pepXML do not match those in XPressPeptideUpdateParser.cgi
2kl...@gmail.com
Re: [spctools-discuss] Xpress ratio in pepXML do not match those in XPressPeptideUpdateParser.cgi
2kl...@gmail.com
[spctools-discuss] Windows 11 Compatibility
Will Comstock
Re: [spctools-discuss] Windows 11 Compatibility
'Luis Mendoza' via spctools-discuss
[spctools-discuss] qtofpeakpicker
Adrian Brun
[spctools-discuss] TMT pro-16plex Libra Condition file
Aarthie Senathirajah
Re: [spctools-discuss] TMT pro-16plex Libra Condition file
Yasir Ahmed
Re: [spctools-discuss] TMT pro-16plex Libra Condition file
Aarthie Senathirajah
RE: [spctools-discuss] TMT pro-16plex Libra Condition file
'Eric Deutsch' via spctools-discuss
[spctools-discuss] Libra quantification on TMT 16-plex returns zeros only
Yasir Ahmed
Re: [spctools-discuss] Libra quantification on TMT 16-plex returns zeros only
'Luis Mendoza' via spctools-discuss
Re: [spctools-discuss] Libra quantification on TMT 16-plex returns zeros only
Yasir Ahmed
Re: [spctools-discuss] Libra quantification on TMT 16-plex returns zeros only
'Luis Mendoza' via spctools-discuss
[spctools-discuss] Install without reboot?
Will Comstock
RE: [spctools-discuss] Install without reboot?
'Eric Deutsch' via spctools-discuss
Re: [spctools-discuss] Install without reboot?
Will Comstock
RE: [spctools-discuss] Install without reboot?
'Eric Deutsch' via spctools-discuss
[spctools-discuss] Load spectra: Warning - no spectra searched : Comet
Aparna Agarwal
[spctools-discuss] Re: Load spectra: Warning - no spectra searched : Comet
Jimmy Eng
[spctools-discuss] Tandem Analysis
Priti Panchal
Re: [spctools-discuss] Tandem Analysis
'Luis Mendoza' via spctools-discuss
[spctools-discuss] Comet parameters
Anju Nagpal
RE: [spctools-discuss] Comet parameters
'Eric Deutsch' via spctools-discuss
Re: [spctools-discuss] Comet parameters
Anju Nagpal
RE: [spctools-discuss] Comet parameters
'Eric Deutsch' via spctools-discuss
Re: [spctools-discuss] Comet parameters
Anju Nagpal
RE: [spctools-discuss] Comet parameters
Eric Deutsch
[spctools-discuss] WGS data analysis costs
Tohid Ghasemnejad
[spctools-discuss] Comet Params file for MS2 and MS3 TMT11-plex, comet won't load any spectra when mslevel=3
Aarthie Senathirajah
Re: [spctools-discuss] Comet Params file for MS2 and MS3 TMT11-plex, comet won't load any spectra when mslevel=3
'Luis Mendoza' via spctools-discuss
[spctools-discuss] SpectraST iRT normalization problem
MT S
[spctools-discuss] account management
Malcolm Cook
Re: [spctools-discuss] account management
'Luis Mendoza' via spctools-discuss
Re: [spctools-discuss] Job runner completion confusion
Malcolm Cook
[spctools-discuss] tpp2mzid: error 4: Syntax error parsing XML
Malcolm Cook
Re: [spctools-discuss] tpp2mzid: error 4: Syntax error parsing XML
'David Shteynberg' via spctools-discuss
Re: [spctools-discuss] tpp2mzid: error 4: Syntax error parsing XML
'David Shteynberg' via spctools-discuss
Re: [spctools-discuss] tpp2mzid: error 4: Syntax error parsing XML
Malcolm Cook
Re: [spctools-discuss] tpp2mzid: error 4: Syntax error parsing XML
Malcolm Cook
Re: [spctools-discuss] tpp2mzid: error 4: Syntax error parsing XML
Malcolm Cook
Re: [spctools-discuss] tpp2mzid: error 4: Syntax error parsing XML
'David Shteynberg' via spctools-discuss
Re: [spctools-discuss] tpp2mzid: error 4: Syntax error parsing XML
Malcolm Cook
Re: [spctools-discuss] tpp2mzid: error 4: Syntax error parsing XML
Malcolm Cook
Re: [spctools-discuss] tpp2mzid: error 4: Syntax error parsing XML
'David Shteynberg' via spctools-discuss
Re: [spctools-discuss] tpp2mzid: error 4: Syntax error parsing XML
Malcolm Cook
[spctools-discuss] getting 403/Forbidden on new install at http://localhost:10401/tpp/cgi-bin/tpp_gui.pl
Malcolm Cook
Re: [spctools-discuss] getting 403/Forbidden on new install at http://localhost:10401/tpp/cgi-bin/tpp_gui.pl
'David Shteynberg' via spctools-discuss
Re: [spctools-discuss] getting 403/Forbidden on new install at http://localhost:10401/tpp/cgi-bin/tpp_gui.pl
Malcolm Cook
Re: [spctools-discuss] getting 403/Forbidden on new install at http://localhost:10401/tpp/cgi-bin/tpp_gui.pl
Malcolm Cook
Re: [spctools-discuss] getting 403/Forbidden on new install at http://localhost:10401/tpp/cgi-bin/tpp_gui.pl
Malcolm Cook
Re: [spctools-discuss] getting 403/Forbidden on new install at http://localhost:10401/tpp/cgi-bin/tpp_gui.pl
'David Shteynberg' via spctools-discuss
[spctools-discuss] stuck with problem making tpp
Malcolm Cook
Re: [spctools-discuss] stuck with problem making tpp
'David Shteynberg' via spctools-discuss
Re: [spctools-discuss] stuck with problem making tpp
Malcolm Cook
Re: [spctools-discuss] stuck with problem making tpp
'David Shteynberg' via spctools-discuss
Re: [spctools-discuss] stuck with problem making tpp
Malcolm Cook
[spctools-discuss] svn checkout errors and a workaround
malcook
[spctools-discuss] TPP @ ASMS 2022 -- Posters and Monday Workshop
'Luis Mendoza' via spctools-discuss
[spctools-discuss] TPP 6.1.0 Release is now available
'Luis Mendoza' via spctools-discuss
[spctools-discuss] Re: TPP 6.1.0 Release is now available
malcook
Re: [spctools-discuss] Re: TPP 6.1.0 Release is now available
'Luis Mendoza' via spctools-discuss
Re: [spctools-discuss] Re: TPP 6.1.0 Release is now available
Malcolm Cook
Re: [spctools-discuss] Re: TPP 6.1.0 Release is now available
'David Shteynberg' via spctools-discuss
Re: [spctools-discuss] Re: TPP 6.1.0 Release is now available
Malcolm Cook
RE: [spctools-discuss] Re: TPP 6.1.0 Release is now available
Eric Deutsch
[spctools-discuss] TPP 6.1.0 rc9 Missing module in Perl installation
Juergen Bartel
Re: [spctools-discuss] TPP 6.1.0 rc9 Missing module in Perl installation
'David Shteynberg' via spctools-discuss
[spctools-discuss] Error in converting .raw file to .mzml file
Jingyi Hu
RE: [spctools-discuss] Error in converting .raw file to .mzml file
'Eric Deutsch' via spctools-discuss
Re: [spctools-discuss] Error in converting .raw file to .mzml file
Jingyi Hu
[spctools-discuss] Error 256 Convert raw to mzML
Jingyi Hu
RE: [spctools-discuss] Error 256 Convert raw to mzML
'Eric Deutsch' via spctools-discuss
[spctools-discuss] Libra on MS3-based TMT quantification
Shagun Gupta
Re: [spctools-discuss] Libra on MS3-based TMT quantification
'David Shteynberg' via spctools-discuss
Re: [spctools-discuss] Libra on MS3-based TMT quantification
Shagun Gupta
Re: [spctools-discuss] Libra on MS3-based TMT quantification
'David Shteynberg' via spctools-discuss
Re: [spctools-discuss] Libra on MS3-based TMT quantification
'David Shteynberg' via spctools-discuss
Re: [spctools-discuss] Libra on MS3-based TMT quantification
Shagun Gupta
Re: [spctools-discuss] Libra on MS3-based TMT quantification
'David Shteynberg' via spctools-discuss
Re: [spctools-discuss] Libra on MS3-based TMT quantification
Shagun Gupta
Re: [spctools-discuss] Libra on MS3-based TMT quantification
'David Shteynberg' via spctools-discuss
Re: [spctools-discuss] Libra on MS3-based TMT quantification
Shagun Gupta
Re: [spctools-discuss] Libra on MS3-based TMT quantification
'David Shteynberg' via spctools-discuss
Re: [spctools-discuss] Libra on MS3-based TMT quantification
Shagun Gupta
Re: [spctools-discuss] Libra on MS3-based TMT quantification
Shagun Gupta
Re: [spctools-discuss] Libra on MS3-based TMT quantification
'David Shteynberg' via spctools-discuss
[spctools-discuss] The common modification list recognized by SpectraST
Zhongzhi
[spctools-discuss] MzXML2Search does not create files
Maxence Le Vasseur
Re: [spctools-discuss] MzXML2Search does not create files
'Luis Mendoza' via spctools-discuss
Re: [spctools-discuss] MzXML2Search does not create files
'Luis Mendoza' via spctools-discuss
[spctools-discuss] Could Libra give me a protein quantification matrix?
JWang Lu
[spctools-discuss] Tandem2XML all-15N issue
Farshad Abdollah-Nia
Re: [spctools-discuss] Tandem2XML all-15N issue
'David Shteynberg' via spctools-discuss
Re: [spctools-discuss] Tandem2XML all-15N issue
Farshad AbdollahNia
Re: [spctools-discuss] Tandem2XML all-15N issue
'David Shteynberg' via spctools-discuss
Re: [spctools-discuss] Tandem2XML all-15N issue
Farshad AbdollahNia
[spctools-discuss] Set number of cores/threads/RAM in SpectraST?
Philip Gerth
RE: [spctools-discuss] Set number of cores/threads/RAM in SpectraST?
Eric Deutsch
Re: [spctools-discuss] Set number of cores/threads/RAM in SpectraST?
Philip Gerth
[spctools-discuss] Setting number of cores/threads/RAM for SpectraST
Philip Gerth
[spctools-discuss] Tandem2XML Unsupported search enzyme
besn efthy
[spctools-discuss] Re: Tandem2XML Unsupported search enzyme
Farshad Abdollah-Nia
[spctools-discuss] TPP Comet search time-out
Steven He
[spctools-discuss] Re: TPP Comet search time-out
Will Comstock
Re: [spctools-discuss] Re: TPP Comet search time-out
Fahad Saeed
Re: [spctools-discuss] Re: TPP Comet search time-out
'David Shteynberg' via spctools-discuss
[spctools-discuss] TPP offline version?
j.l.r...@gmail.com
Re: [spctools-discuss] TPP offline version?
'Luis Mendoza' via spctools-discuss
[spctools-discuss] PTMProphet flags
Pedro Cardoso
Re: [spctools-discuss] PTMProphet flags
'David Shteynberg' via spctools-discuss
[spctools-discuss] MSconvert stopped working
Tim Fugmann
[spctools-discuss] Re: Max input file size limit for comet search?
Jason Winget
RE: [spctools-discuss] Re: Max input file size limit for comet search?
Eric Deutsch
Re: [spctools-discuss] Re: Max input file size limit for comet search?
Steven He
[spctools-discuss] Precursor Intensity after Comet search
Will Comstock
Re: [spctools-discuss] Precursor Intensity after Comet search
'David Shteynberg' via spctools-discuss
Re: [spctools-discuss] Precursor Intensity after Comet search
Will Comstock
[spctools-discuss] TPP 6.0 Libra Error
Will Comstock
Re: [spctools-discuss] TPP 6.0 Libra Error
'David Shteynberg' via spctools-discuss
Re: [spctools-discuss] TPP 6.0 Libra Error
Will Comstock
Re: [spctools-discuss] TPP 6.0 Libra Error
'David Shteynberg' via spctools-discuss
Re: [spctools-discuss] TPP 6.0 Libra Error
'David Shteynberg' via spctools-discuss
Re: [spctools-discuss] TPP 6.0 Libra Error
Will Comstock
Re: [spctools-discuss] TPP 6.0 Libra Error
'David Shteynberg' via spctools-discuss
[spctools-discuss] Cannot execute 'tpp_models.pl' by 'ProphetModels.pl' in TPP_5.2.0
Huang xiaoxiang
Re: [spctools-discuss] Cannot execute 'tpp_models.pl' by 'ProphetModels.pl' in TPP_5.2.0
'Luis Mendoza' via spctools-discuss
[spctools-discuss] PTMProphet and best localization score
Niko Pinter
Re: [spctools-discuss] PTMProphet and best localization score
'David Shteynberg' via spctools-discuss
[spctools-discuss] TPP 6.0.0 Release is now available
'Luis Mendoza' via spctools-discuss
[spctools-discuss] DIALib-QC
Candice Lavelle
Re: [spctools-discuss] DIALib-QC
'Charu Midha' via spctools-discuss
[spctools-discuss] tpp2mzid help - 'no peptide evidence found ...'
'Alastair Skeffington' via spctools-discuss
RE: [spctools-discuss] tpp2mzid help - 'no peptide evidence found ...'
'Michael Hoopmann' via spctools-discuss
Re: [spctools-discuss] tpp2mzid help - 'no peptide evidence found ...'
'Alastair Skeffington' via spctools-discuss
RE: [spctools-discuss] tpp2mzid help - 'no peptide evidence found ...'
Eric Deutsch
Re: [spctools-discuss] tpp2mzid help - 'no peptide evidence found ...'
'Alastair Skeffington' via spctools-discuss
RE: [spctools-discuss] tpp2mzid help - 'no peptide evidence found ...'
'Michael Hoopmann' via spctools-discuss
Re: [spctools-discuss] tpp2mzid help - 'no peptide evidence found ...'
'Alastair Skeffington' via spctools-discuss
RE: [spctools-discuss] tpp2mzid help - 'no peptide evidence found ...'
'Michael Hoopmann' via spctools-discuss
Re: [spctools-discuss] tpp2mzid help - 'no peptide evidence found ...'
'Alastair Skeffington' via spctools-discuss
[spctools-discuss] Exporting StPeter´s ng to mzid
mele...@gmail.com
[spctools-discuss] Re: Exporting StPeter´s ng to mzid
Jason Winget
[spctools-discuss] Re: Exporting StPeter´s ng to mzid
mele...@gmail.com
RE: [spctools-discuss] Re: Exporting StPeter´s ng to mzid
Eric Deutsch
RE: [spctools-discuss] Re: Exporting StPeter´s ng to mzid
Eric Deutsch
Re: [spctools-discuss] Re: Exporting StPeter´s ng to mzid
mele...@gmail.com
Re: [spctools-discuss] Re: Exporting StPeter´s ng to mzid
'Luis Mendoza' via spctools-discuss
[spctools-discuss] xinteract (TPP v5.2.0) not detecting any spectra from comet output
dfermin
Re: [spctools-discuss] xinteract (TPP v5.2.0) not detecting any spectra from comet output
'David Shteynberg' via spctools-discuss
Re: [spctools-discuss] xinteract (TPP v5.2.0) not detecting any spectra from comet output
Jimmy Eng
Re: [spctools-discuss] xinteract (TPP v5.2.0) not detecting any spectra from comet output
dfermin
[spctools-discuss] Changes in number of peptides identifications in TPP 6.0 RC
Oded
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