I really like this new way of handling the output files! Its a really logical and efficient way to handle the spectra and output files.
Thanks for the upgrade. Brian On Thu, Dec 4, 2014 at 3:16 PM, David Shteynberg < david.shteynb...@systemsbiology.org> wrote: > Hello Brian, > > As of the 4.8 release, the outputting of the pepXML results to the > directory containing the search engine parameters is a new intentional > way to store the files. This allows you to keep one directory with > the data (e.g. C:\Inetpub\wwwroot\ISB\data\mydata) and do your > searches in separate directories (e.g. > C:\Inetpub\wwwroot\ISB\data\mycomet and > C:\Inetpub\wwwroot\ISB\data\mytandem). This allows one to run > multiple search engines and use iProphet without copying the data to > each search directory. Hopefully, this will save you some space and > make building more complex processing methods (ones that include > multiple search engines) easier to setup and more efficient. > > Sorry for the confusion. > > -David > > On Thu, Dec 4, 2014 at 11:39 AM, Brian Hampton <bhamp...@my.abrf.org> > wrote: > > Hello, > > > > After doing my first tandem pipeline with v4.8 on a 32bit install of > Windows > > 7, it is putting the generated files in the parameters directory rather > than > > in the directory where the spectrum files live. > > > > I checked the original tandem_params.xml and it specifies the output to > be: > > full_tandem_output_path which is the same as it is on my Linux installs > > where all the output files go to the directory containing the spectrum > files > > (.mzML). > > > > Am I missing a setting? > > > > And I can confirm that ASAPRatio executes much faster than previous > > versions. > > > > > > Thanks in advance. > > > > > > Brian Hampton > > Protein Analysis Lab > > Center for Vascular and Inflammatory Diseases > > University of Maryland School of Medicine > > 655 West Baltimore Street BRB 7-018 > > Baltimore MD 21201 > > V: 410-706-8207 > > > > -- > > You received this message because you are subscribed to the Google Groups > > "spctools-discuss" group. > > To unsubscribe from this group and stop receiving emails from it, send an > > email to spctools-discuss+unsubscr...@googlegroups.com. > > To post to this group, send email to spctools-discuss@googlegroups.com. > > Visit this group at http://groups.google.com/group/spctools-discuss. > > For more options, visit https://groups.google.com/d/optout. > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to spctools-discuss+unsubscr...@googlegroups.com. > To post to this group, send email to spctools-discuss@googlegroups.com. > Visit this group at http://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To post to this group, send email to spctools-discuss@googlegroups.com. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
