Ok, I sent the files to you.

thx.

Heeyoun 

2015년 3월 10일 화요일 오전 2시 22분 11초 UTC+9, Jimmy Eng 님의 말:
>
> Can you make the SQT and sequest.params file available to me?  Either 
> email it to me directly or make it available for download.  I'll take a 
> quick look to see what's happening.  The mzXML/mzML file is optional; it 
> will write instrument info into the resulting pep.xml if present.
>
> - Jimmy
>
> On Sun, Mar 1, 2015 at 9:59 AM, Heeyoun Hwang <tilld...@gmail.com 
> <javascript:>> wrote:
>
>>
>> Hi,
>>
>> Because of my project, I have to search with sequest or ProLuCID in IP2, 
>> and generate pep.XML file from *.sqt file for run the peptide prophet.
>>
>> I know that there is no convert program .sqt to .pep.xml in GUI version 
>> of TPP.
>>
>> So, I used sqt2xml program in command line, but it is not working.
>>
>> the snapshots of .sqt, .sequest.param, and ms2 files were attached in 
>> here.
>>
>> I also tried change the path of FASTA file in param file, but sqt2xml is 
>> still not working.
>>
>> Surely I converted mzXL from .RAW with msconvert. All files are in the 
>> same directory including .mxML. I also attach the snapshot of my folder.
>>
>>
>> thanks.
>>
>> Heeyoun Hwang.
>>
>>
>>
>>
>>
>>
>>
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