Hi Rachel, This should be possible. However, you are not using the latest version of the software which may have fixed some bug you are encountering. Also, iProphet only works on complete pepXML files processed through PeptideProphet first. Are you sure that your files are complete and there wasn't an error in the processing before iProphet was envoked. Please check your pepXML files for completeness. You should check the tail ends of your pepXML files for proper pepXML closing tags and look carefully through the PeptideProphet execution error messages for any clues to the source of the issue. Unfortunately, with the information you've provided the source of the error is not immediately obvious. Please describe your settings running PeptideProphet and if you see any erors there. Please post any output or error upstream of iProphet to help troubleshoot the exact issue here. You might also try to isolate the issue by combining subsets of the 300 files to narrow down the source.
Cheers, -David On Wed, Aug 26, 2015 at 7:52 PM, Rachel <rachel2005...@gmail.com> wrote: > I use TPP v4.7.1. > > On Wednesday, July 22, 2015 at 3:00:11 PM UTC+8, Rachel wrote: > >> I tried to merge ~300 pepxml files using xinteract, it failed for the >> command line is too long. Can anyone tell what is maximum no of pepxml we >> can merge using xinteract? >> >> Thanks so much! >> >> Rachel >> > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to spctools-discuss+unsubscr...@googlegroups.com. > To post to this group, send email to spctools-discuss@googlegroups.com. > Visit this group at http://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To post to this group, send email to spctools-discuss@googlegroups.com. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
