As of the previous couple of releases, the default is to use the parameters directory as the output location for Comet searches. This is to make it easier to manage multiple searches of the same data and avoid overwriting files. Ideally, the comet.params would first get copied to the target directory and edited before starting the search.
In this case I have the feeling that the wrong database is being used, though I know nothing about the data. Cheers, --Luis On Tue, Mar 22, 2016 at 12:15 PM, Jimmy Eng <jke...@gmail.com> wrote: > A related weird part is that it looks like it's looking for (and > presumably writing) the output here: > > c:/Inetpub/wwwroot/ISB/data/parameters/interact.pep.xml > > even though the input data was in > > c:\Inetpub\wwwroot\ISB\data\mydata\ > > > On Tue, Mar 22, 2016 at 12:03 PM, Luis Mendoza < > luis.mend...@systemsbiology.org> wrote: > >> Very likely bad data (or bad analysis), since there are very few spectra: >> >> " read in 57 1+, 27 2+, 2 3+, 0 4+, 0 5+, 0 6+, and 0 7+ spectra." >> >> The modeling fails after that (see the warnings) which means that likely >> no data were written to an output file. Check your search results first. >> >> Cheers, >> --Luis >> > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to spctools-discuss+unsubscr...@googlegroups.com. > To post to this group, send email to spctools-discuss@googlegroups.com. > Visit this group at https://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To post to this group, send email to spctools-discuss@googlegroups.com. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
